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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
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Relationship Details
Type: catalytic chemical reaction GRN ID: re110069 Name: KEGG curated enzyme-catalytic chemical reaction [EC:4.1.1.19] Validated: Y
Direction: Positive
Steps: Direct effect
Upstream node(s):
Downstream node(s):
References:
  • Kanehisa M, Goto S, Sato Y, Kawashima M, Furumichi M, Tanabe M. Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 2014 Jan;42(Database issue):D199-205. doi: 10.1093/nar/gkt1076. Epub 2013 Nov 7. PubMed PMID: 24214961; PubMed Central PMCID: PMC3965122.
  • Enzyme-catalytic chemical reactions were gathered from KEGG database. We downloaded reference sequence for each KEGG Orthology (KO) and further perform BLASTP search against Arabidopsis TAIR10 gene models with an e-value cutoff of 1e-06, which annotate enzyme gene with KO term and also connects corresponding substrates and products with these genes referring to description of KO term.
 
Cross Reference: KEGG:4.1.1.19  
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