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A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node AFB5
Type: Protein GRN ID: np02059 Name: AFB5
Annotation: AFB5 | auxin F-box protein 5
Gene Locus: AT5G49980
References:
  • Walsh TA, Neal R, Merlo AO, Honma M, Hicks GR, Wolff K, Matsumura W, Davies JP. Mutations in an auxin receptor homolog AFB5 and in SGT1b confer resistance to synthetic picolinate auxins and not to 2,4-dichlorophenoxyacetic acid or indole-3-acetic acid in Arabidopsis. Plant Physiol. 2006 Oct;142(2):542-52. Epub 2006 Aug 18. PubMed PMID: 16920877; PubMed Central PMCID: PMC1586033.
 
Pathways: Auxins 
Gene Expression (Affy ATH1 probeset): 248557_at    
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Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 AFB5  --  interacts with  --  AXR2
3 AFB5  --  interacts with  --  IAA8
4 AFB5  --  interacts with  --  ATAUX2-27; AUX2-27; IAA5
5 AFB5  --  interacts with  --  TIR1
6 AFB5  --  interacts with  --  IAA28
7 AFB5  --  is a member of  --  TIR1 family31, coding gene
8 AFB5  --  interacts with  --  AXR2  --  interacts with  --  AXR5
9 AFB5  --  interacts with  --  AXR2  --  interacts with  --  ARF4
10 AFB5  --  interacts with  --  AXR2  --  interacts with  --  AXR3
11 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA18
12 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA20
13 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA27; PAP2
14 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA32; MEE10
15 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA33
16 AFB5  --  interacts with  --  AXR2  --  interacts with  --  BDL
17 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA13
18 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA15
19 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA11
20 AFB5  --  interacts with  --  AXR2  --  interacts with  --  AFB3
21 AFB5  --  interacts with  --  AXR2  --  interacts with  --  AFB1
22 AFB5  --  interacts with  --  AXR2  --  interacts with  --  ATCUL1
23 AFB5  --  interacts with  --  AXR2  --  interacts with  --  TIR
24 AFB5  --  interacts with  --  AXR2  --  interacts with  --  ARF8
25 AFB5  --  interacts with  --  AXR2  --  interacts with  --  ARF7
26 AFB5  --  interacts with  --  AXR2  --  interacts with  --  ARF6
27 AFB5  --  interacts with  --  AXR2  --  interacts with  --  ARF5
28 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA30
29 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA34
30 AFB5  --  interacts with  --  AXR2  --  interacts with  --  ARF22
31 AFB5  --  interacts with  --  AXR2  --  interacts with  --  ARF11
32 AFB5  --  interacts with  --  AXR2  --  interacts with  --  AFB2
33 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA10
34 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA3
35 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA2
36 AFB5  --  interacts with  --  AXR2  --  interacts with  --  IAA19
37 AFB5  --  interacts with  --  AXR2  --  interacts with  --  TPR3
38 AFB5  --  interacts with  --  AXR2  --  has similar expression pattern (mutual information value=0.888679) with  --  PKS2
39 AFB5  --  interacts with  --  AXR2  --  is a member of  --  family38, transcription factor interactor and regulator gene
40 AFB5  --  interacts with  --  AXR2  --  is a member of  --  IAA3 family34, transcription factor interactor and regulator gene
41 AFB5  --  interacts with  --  AXR2  --  is regulated by  --  HY5
42 AFB5  --  interacts with  --  IAA8  --  regulates the expression of   --  ARF16
43 AFB5  --  interacts with  --  IAA8  --  regulates the expression of   --  ARF1; ATARF; ATARF1; ATARFA1A
44 AFB5  --  interacts with  --  IAA8  --  regulates the expression of   --  AtTPR2; TPR2
45 AFB5  --  interacts with  --  IAA8  --  interacts with  --  IAA9
46 AFB5  --  interacts with  --  IAA8  --  interacts with  --  ARF9
47 AFB5  --  interacts with  --  IAA8  --  interacts with  --  ARF20
48 AFB5  --  interacts with  --  IAA8  --  interacts with  --  ARF15
49 AFB5  --  interacts with  --  IAA8  --  interacts with  --  ARF14
50 AFB5  --  interacts with  --  IAA8  --  interacts with  --  ATAUX2-11; IAA4
51 AFB5  --  interacts with  --  IAA8  --  interacts with  --  AtHB32; HB32; ZHD14
52 AFB5  --  interacts with  --  IAA8  --  interacts with  --  TPR2
53 AFB5  --  interacts with  --  ATAUX2-27; AUX2-27; IAA5  --  interacts with  --  ARF10
54 AFB5  --  interacts with  --  ATAUX2-27; AUX2-27; IAA5  --  interacts with  --  IAA29
55 AFB5  --  interacts with  --  ATAUX2-27; AUX2-27; IAA5  --  interacts with  --  IAA31
56 AFB5  --  interacts with  --  ATAUX2-27; AUX2-27; IAA5  --  is modified by  --  MPK16
57 AFB5  --  interacts with  --  TIR1  --  interacts with  --  AUX1
58 AFB5  --  interacts with  --  TIR1  --  interacts with  --  CIP1
59 AFB5  --  interacts with  --  TIR1  --  interacts with  --  ASK3; SK3
60 AFB5  --  interacts with  --  TIR1  --  interacts with  --  ASK9; SK9
61 AFB5  --  interacts with  --  TIR1  --  interacts with  --  RCE1
62 AFB5  --  interacts with  --  TIR1  --  is the target gene of  --  ath-miR852
63 AFB5  --  interacts with  --  TIR1  --  is the target gene of  --  ath-miR393b
64 AFB5  --  interacts with  --  TIR1  --  is the target gene of  --  ath-miR393a
65 AFB5  --  interacts with  --  IAA28  --  regulates the expression of   --  ARF12
66 AFB5  --  interacts with  --  IAA28  --  interacts with  --  ARF18
67 AFB5  --  interacts with  --  IAA28  --  interacts with  --  ARF1
68 AFB5  --  interacts with  --  IAA28  --  interacts with  --  IAA26; PAP1
69 AFB5  --  is a member of  --  TIR1 family31, coding gene  --  is a member of  --  np2055 complex12
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