Welcome to HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

	Screen Resolution:
	Welcome to HRGRN A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks

Location: Home > Details for node atcm family, coding gene

Type: Family	GRN ID: gf08014	Name: atcm family, coding gene
Annotation:	coding gene family, members include ATCM1; CM1, ATCM2; CM2
References:	Strawn MA, Marr SK, Inoue K, Inada N, Zubieta C, Wildermuth MC. Arabidopsis isochorismate synthase functional in pathogen-induced salicylate biosynthesis exhibits properties consistent with a role in diverse stress responses. J Biol Chem. 2007 Feb 23;282(8):5919-33. Epub 2006 Dec 26. PubMed PMID: 17190832.
Pathways:	Salicylic acid

Choose color for highlight:

Display edge: validated and predicted
Display node/edge prompt:
Layout:
as format

Protein modification

Protein-protein interaction
also include predicted relationship

Compound-protein interaction

TF-target gene regulation

Small RNA-target regulation
also include predicted relationship

Carrier and transported molecule

Catalytic chemical reaction

Co-expressed gene pair
with mutual information value >

Ignore nodes having > relationships

Relationship type:	protein modification catalytic chemical reaction protein-protein interaction compound-protein interaction TF-target gene regulation small RNA-target regulation co-expressed gene pair carrier and transported molecule family/complex and member
Relationship evidence:	Solid line: validated Dashed line: predicted
Relationship direction:	Arrow: positive T shape: negative None arrow: unknown or n/a
Hormone association:	Thicker line: hormone related relationship : hormone related Node
Node type:	Transcription factor or transcriptional regulator Compound Kinase Small regulatory RNA (miRNA & ta-siRNA) Other nodes

No.	Path
2	atcm family, coding gene -- has product (in catalytic reaction) -- prephenic acid
3	atcm family, coding gene -- has family member -- ATCM2; CM2
4	atcm family, coding gene -- has family member -- ATCM1; CM1
5	atcm family, coding gene -- has product (in catalytic reaction) -- prephenic acid -- has product (in catalytic reaction) -- Phenylalanine
6	atcm family, coding gene -- has product (in catalytic reaction) -- prephenic acid -- has product (in catalytic reaction) -- Phenylpyruvate
7	atcm family, coding gene -- has product (in catalytic reaction) -- prephenic acid -- is product (in catalytic reaction) of -- SA
8	atcm family, coding gene -- has product (in catalytic reaction) -- prephenic acid -- is product (in catalytic reaction) of -- Chorismate
9	atcm family, coding gene -- has product (in catalytic reaction) -- prephenic acid -- is product (in catalytic reaction) of -- cm-3; CM3
10	atcm family, coding gene -- has product (in catalytic reaction) -- prephenic acid -- is product (in catalytic reaction) of -- AAT; ATAAT; MEE17
11	atcm family, coding gene -- has product (in catalytic reaction) -- prephenic acid -- is product (in catalytic reaction) of -- L-Arogenate

	Funding by the National Science Foundation	Funding by the Oklahoma Center for the Advancement of Science & Technology	Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab Disclaimer \| Contact