Screen Resolution:     
Welcome to HRGRN
A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks   
Location:  Home > Details for node TCP family1, transcription factor gene
Type: Family GRN ID: gf07010 Name: TCP family1, transcription factor gene
Annotation: transcription factor gene family, members include TCP2; TCP2, MEE35; TCP4, TCP10, TCP3, ATTCP24; TCP24
References:
  • Schommer C, Palatnik JF, Aggarwal P, Chételat A, Cubas P, Farmer EE, Nath U, Weigel D. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol. 2008 Sep 23;6(9):e230. doi: 10.1371/journal.pbio.0060230. PubMed PMID: 18816164; PubMed Central PMCID: PMC2553836.
 
Pathways: Jasmonates 
Graph Customization
   
Choose color for highlight:  
Display edge: validated and predicted
Display node/edge prompt:
Layout:
 as format     
Data Filter
 Protein modification
 Protein-protein interaction
        also include predicted relationship
 Compound-protein interaction
 TF-target gene regulation
 Small RNA-target regulation
        also include predicted relationship
 Carrier and transported molecule
 Catalytic chemical reaction
 Co-expressed gene pair
        with mutual information value >

  Ignore nodes having > relationships
 
Relationship type:  protein modification     catalytic chemical reaction     protein-protein interaction    
compound-protein interaction     TF-target gene regulation     small RNA-target regulation    
co-expressed gene pair     carrier and transported molecule     family/complex and member
Relationship evidence:  Solid line: validated          Dashed line: predicted
Relationship direction: Arrow: positive          T shape: negative          None arrow: unknown or n/a
Hormone association: Thicker line: hormone related relationship         : hormone related Node
Node type:  Transcription factor or transcriptional regulator       Compound       Kinase
 Small regulatory RNA (miRNA & ta-siRNA)       Other nodes
No. Path
2 TCP family1, transcription factor gene  --  is the target gene of  --  JAW; MIR319; MIR319A
3 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24
4 TCP family1, transcription factor gene  --  has family member  --  TCP3
5 TCP family1, transcription factor gene  --  has family member  --  TCP10
6 TCP family1, transcription factor gene  --  has family member  --  MEE35; TCP4
7 TCP family1, transcription factor gene  --  has family member  --  TCP2; TCP2
8 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  TCP8
9 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  TCP5
10 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  AS2
11 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  ABAP1
12 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  NZZ; SPL
13 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  AtTCP11; TCP11
14 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  AT1G35560
15 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  AtTCP15; TCP15
16 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  AT-TCP20; ATTCP20; PCF1; TCP20
17 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  AT5G51910
18 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  AT2G37000
19 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  PTF1; TCP13; TFPD
20 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  interacts with  --  TCP17
21 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  has similar expression pattern (mutual information value=0.970806) with  --  AT3G04760
22 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  has similar expression pattern (mutual information value=1.03449) with  --  ATHM4; ATM4; TRX-M4
23 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  has similar expression pattern (mutual information value=0.948673) with  --  AT3G56010
24 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  has similar expression pattern (mutual information value=0.934203) with  --  AT3G56650
25 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  has similar expression pattern (mutual information value=0.934718) with  --  EMB2728; RPE
26 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  is a member of  --  TCPS family2, transcription factor gene
27 TCP family1, transcription factor gene  --  has family member  --  ATTCP24; TCP24  --  is the target gene of  --  ath-miR319c
28 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  ATWRKY28; WRKY28
29 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  ATMYBL2; MYBL2
30 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  ATMYB111; MYB111; PFG3
31 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  ATMYB12; MYB12; PFG1
32 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  AtMYB114; MYB114
33 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  AtMYB113; MYB113
34 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  ATMYB90; MYB90; PAP2
35 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  ATMYB75; MYB75; PAP1; SIAA1
36 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  ATMYB123; ATTT2; MYB123; TT2
37 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  ATPRR1; PRR1
38 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  CHR3; SYD
39 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  ATSWI3B?
40 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  interacts with  --  TPR3
41 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.94385) with  --  AT2G35410
42 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.900888) with  --  AtIDD5; IDD5
43 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.888899) with  --  AT2G37220
44 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.886452) with  --  NDH-O
45 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.911363) with  --  RPS9; TWN3
46 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.953781) with  --  AT1G68520
47 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=1.14785) with  --  ATGER1; GER1; GLP1
48 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.851965) with  --  AT3G14420
49 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.851965) with  --  AT3G14415
50 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.854981) with  --  HYR1
51 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.983848) with  --  ATHM2
52 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.901217) with  --  AT3G63160
53 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.95299) with  --  AT5G52780
54 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.818482) with  --  AT5G55620
55 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.898135) with  --  CLB4; CSB3; GCPE; HDS; ISPG
56 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.844324) with  --  AT5G62260
57 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.876877) with  --  AT5G20935
58 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=0.84009) with  --  ATGER3; GER3; GLP3; GLP3A; GLP3B
59 TCP family1, transcription factor gene  --  has family member  --  TCP3  --  has similar expression pattern (mutual information value=1.00182) with  --  YAB5
60 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  interacts with  --  AHP3
61 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  interacts with  --  AHP2
62 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  interacts with  --  AHP1
63 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  has similar expression pattern (mutual information value=0.868079) with  --  BLH4; SAW2
64 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  has similar expression pattern (mutual information value=0.933519) with  --  AT1G23130
65 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  has similar expression pattern (mutual information value=0.912491) with  --  PTAC4; VIPP1
66 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  has similar expression pattern (mutual information value=0.864489) with  --  ATGLK1; GLK1; GPRI1
67 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  has similar expression pattern (mutual information value=0.826642) with  --  FMA
68 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  has similar expression pattern (mutual information value=0.927372) with  --  DFL2; GH3-10
69 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  has similar expression pattern (mutual information value=0.814002) with  --  AT3G45260
70 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  has similar expression pattern (mutual information value=0.857388) with  --  iqd21
71 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  has similar expression pattern (mutual information value=0.879799) with  --  BEH1
72 TCP family1, transcription factor gene  --  has family member  --  TCP10  --  has similar expression pattern (mutual information value=0.958483) with  --  XTH6
73 TCP family1, transcription factor gene  --  has family member  --  MEE35; TCP4  --  regulates the expression of   --  lox family, coding gene
74 TCP family1, transcription factor gene  --  has family member  --  MEE35; TCP4  --  has similar expression pattern (mutual information value=0.813774) with  --  AT1G11430
75 TCP family1, transcription factor gene  --  has family member  --  MEE35; TCP4  --  interacts with  --  AHL27; ESC; ORE7
76 TCP family1, transcription factor gene  --  has family member  --  MEE35; TCP4  --  interacts with  --  TPR2
77 TCP family1, transcription factor gene  --  has family member  --  TCP2; TCP2  --  interacts with  --  APRR5; PRR5
78 TCP family1, transcription factor gene  --  has family member  --  TCP2; TCP2  --  interacts with  --  APRR3; PRR3
79 TCP family1, transcription factor gene  --  has family member  --  TCP2; TCP2  --  interacts with  --  PIF3
80 TCP family1, transcription factor gene  --  has family member  --  TCP2; TCP2  --  interacts with  --  LHY; LHY1
81 TCP family1, transcription factor gene  --  has family member  --  TCP2; TCP2  --  interacts with  --  AtCCA1; CCA1
   Funding by the National Science Foundation    Funding by the Oklahoma Center for the Advancement of Science & Technology    Additional funding by the Samuel Roberts Noble Foundation

Copyright © The Zhao Lab

Disclaimer | Contact