LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

Name	Comprehensive analysis of salinity stress inducible genes in Oryza sativa
Description	Illumina mRNA-seq analysis was performed to detect salinity stress inducible genes in Oryza sativa L. ssp. japonica cv. Nipponbare. Seeds of rice were germinated at 28o C in a sterilized germination tray. The seedlings had been grown for 7 days at 28o degrees C. Total RNA were extracted from shoots and roots under normal and 1 hr after salinity stress (150 mM NaCl solution). The expression profiles among four samples were compared to find rice salinity stress inducible genes. This work was supported by a grant from the Ministry of Agriculture, Forestry and Fisheries of Japan (Genomics for Agricultural Innovation, RTR-0001).
Contact	NIAS
Xref	PRJDA46487
Reference	Mizuno H et al . 2010;
Conditions	4
Species	Oryza sativa
Metadata export	.CSV .JSON

Mapped Genomes	Osativa323V7
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Name	Genotype	Stage	Tissue	Treatment	Samples	Xref	Download alignments
root_1h_salt	Nipponbare	7 days	root	Nipponbare root 1hr after salinity stress	root_1h_salt_1 root_1h_salt_2 root_1h_salt_3	DRR000352 DRR000356 DRR000357	.bam .bai .csi .bam .bai .csi .bam .bai .csi
root_control	Nipponbare	7 days	root	Nipponbare root under normal condition	root_control_1 root_control_2	DRR000350 DRR000354	.bam .bai .csi .bam .bai .csi
shoot_1h_salt	Nipponbare	7 days	shoot	Nipponbare shoot 1hr after salinity stress	shoot_1h_salt_1 shoot_1h_salt_2	DRR000351 DRR000355	.bam .bai .csi .bam .bai .csi
shoot_control	Nipponbare	7 days	shoot	Nipponbare shoot under normal condition	shoot_control_1 shoot_control_2	DRR000349 DRR000353	.bam .bai .csi .bam .bai .csi