LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

[H. vulgare (transcript)]
Detail of Experiment mapped on Hordeum vulgare vulgare L Hvulgare462r1

Details

Name	Root transcriptomes of barley under drought, high salt and combined stress
Description	RNA-Sequencing data of whole roots of young barley seedlings subjected to drought, high salt and a combination treatment after six and 24 hours
Contact	University of Bonn
Xref	PRJNA435959
Reference	Osthoff A et al . 2019;
Conditions	8
Species	Hordeum vulgare
Metadata export	.CSV .JSON

Analysis

Mapped Genomes	Hvulgare462r1
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Conditions

Name	Genotype	Mutation	Stage	Tissue	Treatment	Level	Time	Samples	Xref	Download alignments
CTRL-24h	wt	Scarlett	seedling	whole root	control_24h			CTRL-24h_1 CTRL-24h_2 CTRL-24h_3 CTRL-24h_4	SRR6782247 SRR6782244 SRR6782257 SRR6782243	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
CTRL-6H	wt	Scarlett	seedling	whole root	control_6h			CTRL-6H_1 CTRL-6H_2 CTRL-6H_3 CTRL-6H_4	SRR6782240 SRR6782241 SRR6782238 SRR6782239	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
DR-24h	wt	Scarlett	seedling	whole root	PEG8000 (-0.8 MPa)_24h			DR-24h_1 DR-24h_2 DR-24h_3 DR-24h_4	SRR6782249 SRR6782250 SRR6782254 SRR6782256	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
DR-6h	wt	Scarlett	seedling	whole root	PEG8000 (-0.8 MPa)_6h			DR-6h_1 DR-6h_2 DR-6h_3 DR-6h_4	SRR6782236 SRR6782237 SRR6782251 SRR6782255	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
S-24h	wt	Scarlett	seedling	whole root	150 mM NaCl_24h			S-24h_1 S-24h_2 S-24h_3 S-24h_4	SRR6782267 SRR6782266 SRR6782242 SRR6782245	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
S-6h	wt	Scarlett	seedling	whole root	150 mM NaCl_6h			S-6h_1 S-6h_2 S-6h_3 S-6h_4	SRR6782265 SRR6782264 SRR6782262 SRR6782261	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
SD-24h	wt	Scarlett	seedling	whole root	PEG8000 (-0.8 MPa) + 150mM NaCl_24h			SD-24h_1 SD-24h_2 SD-24h_3 SD-24h_4	SRR6782260 SRR6782263 SRR6782259 SRR6782258	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
SD-6h	wt	Scarlett	seedling	whole root	PEG8000 (-0.8 MPa) + 150mM NaCl_6h			SD-6h_1 SD-6h_2 SD-6h_3 SD-6h_4	SRR6782252 SRR6782253 SRR6782246 SRR6782248	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi