LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

[H. vulgare (gene)]
Detail of Experiment mapped on Hordeum vulgare vulgare L Hvulgare462r1

Details

Name	Transcriptome of barley under three different heavy metal stress conditions
Description	The aim of the study is to identify gene regulated by three heavy metal: copper, zinc and cadmium.
Contact	CENTRE OF PLANT STRUCTURAL AND FUNCTIONAL GENOMICS
Xref	PRJNA382490
Reference	Kintlová M et al . 2017;
Conditions	12
Species	Hordeum vulgare
Metadata export	.CSV .JSON

Analysis

Mapped Genomes	Hvulgare462r1
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Conditions

Name	Genotype	Mutation	Stage	Tissue	Treatment	Level	Time	Samples	Xref	Download alignments
Roots50Cu	Morex		7days seedling	roots	50 µM Cu			Roots50Cu_1 Roots50Cu_2 Roots50Cu_3	SRR5452125 SRR5452123 SRR5452121	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Roots570Zn	Morex		7days seedling	roots	570 µM Zn			Roots570Zn_1 Roots570Zn_2 Roots570Zn_3	SRR5452113 SRR5452111 SRR5452109	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Roots80Cd	Morex		7days seedling	roots	80 µM Cd			Roots80Cd_1 Roots80Cd_2 Roots80Cd_3	SRR5452101 SRR5452099 SRR5452097	.bam .bai .csi .bam .bai .csi .bam .bai .csi
RootsControlCd	Morex		7days seedling	roots	control Cd			RootsControlCd_1 RootsControlCd_2 RootsControlCd_3	SRR5452107 SRR5452105 SRR5452103	.bam .bai .csi .bam .bai .csi .bam .bai .csi
RootsControlCu	Morex		7days seedling	roots	control Cu			RootsControlCu_1 RootsControlCu_2 RootsControlCu_3	SRR5452131 SRR5452129 SRR5452127	.bam .bai .csi .bam .bai .csi .bam .bai .csi
RootsControlZn	Morex		7days seedling	roots	control Zn			RootsControlZn_1 RootsControlZn_2 RootsControlZn_3	SRR5452119 SRR5452117 SRR5452115	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Shoots50Cu	Morex		7days seedling	shoots	50 µM Cu			Shoots50Cu_1 Shoots50Cu_2 Shoots50Cu_3	SRR5452126 SRR5452124 SRR5452122	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Shoots570Zn	Morex		7days seedling	shoots	570 µM Zn			Shoots570Zn_1 Shoots570Zn_2 Shoots570Zn_3	SRR5452114 SRR5452112 SRR5452110	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Shoots80Cd	Morex		7days seedling	shoots	80 µM Cd			Shoots80Cd_1 Shoots80Cd_2 Shoots80Cd_3	SRR5452102 SRR5452100 SRR5452098	.bam .bai .csi .bam .bai .csi .bam .bai .csi
ShootsControlCd	Morex		7days seedling	shoots	control Cd			ShootsControlCd_1 ShootsControlCd_2 ShootsControlCd_3	SRR5452108 SRR5452106 SRR5452104	.bam .bai .csi .bam .bai .csi .bam .bai .csi
ShootsControlCu	Morex		7days seedling	shoots	control Cu			ShootsControlCu_1 ShootsControlCu_2 ShootsControlCu_3	SRR5452132 SRR5452130 SRR5452128	.bam .bai .csi .bam .bai .csi .bam .bai .csi
ShootsControlZn	Morex		7days seedling	shoots	control Zn			ShootsControlZn_1 ShootsControlZn_2 ShootsControlZn_3	SRR5452120 SRR5452118 SRR5452116	.bam .bai .csi .bam .bai .csi .bam .bai .csi