LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

[S. lycopersicum (transcript)]
Detail of Experiment mapped on Solanum lycopersicum ITAG3.2

Details

Name	RNA-seq of tomato in low nitrogen
Description	RNA-seq of two contrasting tomato genotypes in response to low nitrogen
Contact	Huazhong agricultural university
Xref	PRJNA578768
Reference
Conditions	16
Species	Solanum lycopersicum
Metadata export	.CSV .JSON

Analysis

Mapped Genomes	ITAG3.2
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Conditions

Name	Genotype	Mutation	Stage	Tissue	Treatment	Level	Time	Samples	Xref	Download alignments
GOCNL1d		Guozhen No.1	1 day after treatment	leaf	CK			GOCNL1d_1 GOCNL1d_2 GOCNL1d_3	SRR10321355 SRR10321354 SRR10321353	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GOCNL7d		Guozhen No.1	7 day after treatment	leaf	CK			GOCNL7d_1 GOCNL7d_2 GOCNL7d_3	SRR10321329 SRR10321327 SRR10321326	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GOCNR1d		Guozhen No.1	1 day after treatment	root	CK			GOCNR1d_1 GOCNR1d_2 GOCNR1d_3	SRR10321358 SRR10321357 SRR10321356	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GOCNR7d		Guozhen No.1	7 day after treatment	root	CK			GOCNR7d_1 GOCNR7d_2 GOCNR7d_3	SRR10321332 SRR10321331 SRR10321330	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GOLNL1d		Guozhen No.1	1 day after treatment	leaf	Low nitrogen			GOLNL1d_1 GOLNL1d_2 GOLNL1d_3	SRR10321348 SRR10321347 SRR10321346	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GOLNL7d		Guozhen No.1	7 day after treatment	leaf	Low nitrogen			GOLNL7d_1 GOLNL7d_2 GOLNL7d_3	SRR10321322 SRR10321321 SRR10321320	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GOLNR1d		Guozhen No.1	1 day after treatment	root	Low nitrogen			GOLNR1d_1 GOLNR1d_2 GOLNR1d_3	SRR10321352 SRR10321351 SRR10321349	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GOLNR7d		Guozhen No.1	7 day after treatment	root	Low nitrogen			GOLNR7d_1 GOLNR7d_2 GOLNR7d_3	SRR10321325 SRR10321324 SRR10321323	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GUCNL1d		Guizhen No.1	1 day after treatment	leaf	CK			GUCNL1d_1 GUCNL1d_2 GUCNL1d_3	SRR10321339 SRR10321328 SRR10321319	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GUCNL7d		Guizhen No.1	7 day after treatment	leaf	CK			GUCNL7d_1 GUCNL7d_2 GUCNL7d_3	SRR10321342 SRR10321341 SRR10321340	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GUCNR1d		Guizhen No.1	1 day after treatment	root	CK			GUCNR1d_1 GUCNR1d_2 GUCNR1d_3	SRR10321362 SRR10321361 SRR10321350	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GUCNR7d		Guizhen No.1	7 day after treatment	root	CK			GUCNR7d_1 GUCNR7d_2 GUCNR7d_3	SRR10321345 SRR10321344 SRR10321343	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GULNL1d		Guizhen No.1	1 day after treatment	leaf	Low nitrogen			GULNL1d_1 GULNL1d_2 GULNL1d_3	SRR10321315 SRR10321360 SRR10321359	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GULNL7d		Guizhen No.1	7 day after treatment	leaf	Low nitrogen			GULNL7d_1 GULNL7d_2 GULNL7d_3	SRR10321335 SRR10321334 SRR10321333	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GULNR1d		Guizhen No.1	1 day after treatment	root	Low nitrogen			GULNR1d_1 GULNR1d_2 GULNR1d_3	SRR10321318 SRR10321317 SRR10321316	.bam .bai .csi .bam .bai .csi .bam .bai .csi
GULNR7d		Guizhen No.1	7 day after treatment	root	Low nitrogen			GULNR7d_1 GULNR7d_2 GULNR7d_3	SRR10321338 SRR10321337 SRR10321336	.bam .bai .csi .bam .bai .csi .bam .bai .csi