LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

Details

Name	Symbiotic Interactions and Root Development
Description	In order to better understand the commonalities and differences in lateral root and nodule development, we compared their organogenesis and correlated this with changes in gene expression. To initiate lateral roots in Medicago truncatula we turned 2-day-old seedlings 135°, before returning them to their original axis of growth, while for nodule initiation we applied droplets of Sinorhizobium meliloti on the susceptibility zone of the root. Overall design: Medicago truncatula mRNA samples from root tissues after 12-72 hours of lateral root initiation. segment of root tissues in 0-168 hours after applying Sinorhizobium meliloti in wild type (jemalong cultivar Jester) was compared with mock treatments. Samples of root segment from cre-1,nin-1 mutants was collected after 12,24 hours after applying Sinorhizobium meliloti and 24 hours for lbd16-1, and lbd16/lbd11 mutants which were also compared with mock treated samples. The mRNA samples from overexpression of LBD11,LBD16 was collected from hairy root transformations of Medicago truncatula
Contact	Tak Lee (tak.lee@slcu.cam.ac.uk)
Xref	PRJNA552042
Reference	Schiessl K et al . 2019;
Conditions	59
Species	Medicago truncatula
Metadata export	.CSV .JSON

Analysis

Mapped Genomes	MtrunA17r5.0 MtV4.0
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Conditions

Name	Genotype	Tissue	Treatment	Time	Samples	Xref	Download alignments
cre1_12h_mock	cre1 mutant ecotype jemalong cultivar Jester	root	mock	12h	cre1_12h_mock_1 cre1_12h_mock_2 cre1_12h_mock_3	SRR9623276 SRR9623277 SRR9623278	.bam .bai .csi .bam .bai .csi .bam .bai .csi
cre1_12h_S.meliloti	cre1 mutant ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	12h	cre1_12h_S.meliloti_1 cre1_12h_S.meliloti_2 cre1_12h_S.meliloti_3	SRR9623279 SRR9623280 SRR9623281	.bam .bai .csi .bam .bai .csi .bam .bai .csi
cre1_24h_mock	cre1 mutant ecotype jemalong cultivar Jester	root	mock	24h	cre1_24h_mock_1 cre1_24h_mock_2 cre1_24h_mock_3	SRR9623282 SRR9623283 SRR9623284	.bam .bai .csi .bam .bai .csi .bam .bai .csi
cre1_24h_S.meliloti	cre1 mutant ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	24h	cre1_24h_S.meliloti_1 cre1_24h_S.meliloti_2 cre1_24h_S.meliloti_3	SRR9623285 SRR9623286 SRR9623287	.bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_12h_control	wild type ecotype jemalong cultivar Jester	root	no treatment	12h of lateral root initiation	latroot_12h_control_1 latroot_12h_control_2 latroot_12h_control_3 latroot_12h_control_4	SRR9623319 SRR9623320 SRR9623321 SRR9623322	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_12h_turned	wild type ecotype jemalong cultivar Jester	root	turned 135° for 12 hours	12h of lateral root initiation	latroot_12h_turned_1 latroot_12h_turned_2 latroot_12h_turned_3 latroot_12h_turned_4	SRR9623323 SRR9623324 SRR9623325 SRR9623326	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_24h_control	wild type ecotype jemalong cultivar Jester	root	no treatment	24h of lateral root initiation	latroot_24h_control_1 latroot_24h_control_2 latroot_24h_control_3 latroot_24h_control_4	SRR9623327 SRR9623328 SRR9623329 SRR9623330	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_24h_turned	wild type ecotype jemalong cultivar Jester	root	turned 135° for 12 hours	24h of lateral root initiation	latroot_24h_turned_1 latroot_24h_turned_2 latroot_24h_turned_3 latroot_24h_turned_4	SRR9623331 SRR9623332 SRR9623333 SRR9623334	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_36h_control	wild type ecotype jemalong cultivar Jester	root	no treatment	36h of lateral root initiation	latroot_36h_control_1 latroot_36h_control_2 latroot_36h_control_3 latroot_36h_control_4	SRR9623335 SRR9623336 SRR9623337 SRR9623338	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_36h_turned	wild type ecotype jemalong cultivar Jester	root	turned 135° for 12 hours	36h of lateral root initiation	latroot_36h_turned_1 latroot_36h_turned_2 latroot_36h_turned_3 latroot_36h_turned_4	SRR9623339 SRR9623340 SRR9623341 SRR9623342	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_48h_control	wild type ecotype jemalong cultivar Jester	root	no treatment	48h of lateral root initiation	latroot_48h_control_1 latroot_48h_control_2 latroot_48h_control_3 latroot_48h_control_4	SRR9623343 SRR9623344 SRR9623345 SRR9623346	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_48h_turned	wild type ecotype jemalong cultivar Jester	root	turned 135° for 12 hours	48h of lateral root initiation	latroot_48h_turned_1 latroot_48h_turned_2 latroot_48h_turned_3 latroot_48h_turned_4	SRR9623347 SRR9623348 SRR9623349 SRR9623350	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_60h_control	wild type ecotype jemalong cultivar Jester	root	no treatment	60h of lateral root initiation	latroot_60h_control_1 latroot_60h_control_2 latroot_60h_control_3 latroot_60h_control_4	SRR9623351 SRR9623352 SRR9623353 SRR9623354	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_60h_turned	wild type ecotype jemalong cultivar Jester	root	turned 135° for 12 hours	60h of lateral root initiation	latroot_60h_turned_1 latroot_60h_turned_2 latroot_60h_turned_3 latroot_60h_turned_4	SRR9623355 SRR9623356 SRR9623357 SRR9623358	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_72h_control	wild type ecotype jemalong cultivar Jester	root	no treatment	72h of lateral root initiation	latroot_72h_control_1 latroot_72h_control_2 latroot_72h_control_3 latroot_72h_control_4	SRR9623359 SRR9623360 SRR9623361 SRR9623362	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
latroot_72h_turned	wild type ecotype jemalong cultivar Jester	root	turned 135° for 12 hours	72h of lateral root initiation	latroot_72h_turned_1 latroot_72h_turned_2 latroot_72h_turned_3 latroot_72h_turned_4	SRR9623363 SRR9623364 SRR9623365 SRR9623366	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
lbd11-16_24h_mock	lbd16/lbd11 doble mutant ecotype R108	root	mock	24h	lbd11-16_24h_mock_1 lbd11-16_24h_mock_2 lbd11-16_24h_mock_3	SRR9623300 SRR9623301 SRR9623302	.bam .bai .csi .bam .bai .csi .bam .bai .csi
lbd11-16_24h_S.meliloti	lbd16/lbd11 doble mutant ecotype R108	root	Inoculated with Sinorhizobium meliloti strain 2011	24h	lbd11-16_24h_S.meliloti_1 lbd11-16_24h_S.meliloti_2 lbd11-16_24h_S.meliloti_3 lbd11-16_24h_S.meliloti_4	SRR9623296 SRR9623297 SRR9623298 SRR9623299	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
lbd16_24h_mock	lbd16 mutant ecotype R108	root	mock	24h	lbd16_24h_mock_1 lbd16_24h_mock_2 lbd16_24h_mock_3 lbd16_24h_mock_4	SRR9623292 SRR9623293 SRR9623294 SRR9623295	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
lbd16_24h_S.meliloti	lbd16 mutant ecotype R108	root	Inoculated with Sinorhizobium meliloti strain 2011	24h	lbd16_24h_S.meliloti_1 lbd16_24h_S.meliloti_2 lbd16_24h_S.meliloti_3 lbd16_24h_S.meliloti_4	SRR9623288 SRR9623289 SRR9623290 SRR9623291	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
nin_12h_mock	nin mutant ecotype jemalong cultivar Jester	root	mock	12h	nin_12h_mock_1 nin_12h_mock_2 nin_12h_mock_3	SRR9623264 SRR9623265 SRR9623266	.bam .bai .csi .bam .bai .csi .bam .bai .csi
nin_12h_S.meliloti	nin mutant ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	12h	nin_12h_S.meliloti_1 nin_12h_S.meliloti_2 nin_12h_S.meliloti_3	SRR9623267 SRR9623268 SRR9623269	.bam .bai .csi .bam .bai .csi .bam .bai .csi
nin_24h_mock	nin mutant ecotype jemalong cultivar Jester	root	mock	24h	nin_24h_mock_1 nin_24h_mock_2 nin_24h_mock_3	SRR9623270 SRR9623271 SRR9623272	.bam .bai .csi .bam .bai .csi .bam .bai .csi
nin_24h_S.meliloti	nin mutant ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	24h	nin_24h_S.meliloti_1 nin_24h_S.meliloti_2 nin_24h_S.meliloti_3	SRR9623273 SRR9623274 SRR9623275	.bam .bai .csi .bam .bai .csi .bam .bai .csi
pLjUBI_GFPcontrol_forLBD	wild type ecotype jemalong cultivar Jester transformed with pLjUBI:GFP	root	no treatment		pLjUBI_GFPcontrol_forLBD_1 pLjUBI_GFPcontrol_forLBD_2 pLjUBI_GFPcontrol_forLBD_3 pLjUBI_GFPcontrol_forLBD_4	SRR9623374 SRR9623375 SRR9623376 SRR9623377	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
pLjUBI_LBD11	wild type ecotype jemalong cultivar Jester transformed with pLjUBI:LBD11	root	no treatment		pLjUBI_LBD11_1 pLjUBI_LBD11_2 pLjUBI_LBD11_3	SRR9623371 SRR9623372 SRR9623373	.bam .bai .csi .bam .bai .csi .bam .bai .csi
pLjUBI_LBD16	wild type ecotype jemalong cultivar Jester transformed with pLjUBI:LBD16	root	no treatment		pLjUBI_LBD16_1 pLjUBI_LBD16_2 pLjUBI_LBD16_3 pLjUBI_LBD16_4	SRR9623367 SRR9623368 SRR9623369 SRR9623370	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
R108_24hrs_mock	wild type ecotype R108	root	mock	24h	R108_24hrs_mock_1 R108_24hrs_mock_2 R108_24hrs_mock_3 R108_24hrs_mock_4	SRR9623307 SRR9623308 SRR9623309 SRR9623310	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
R108_24hrs_S.meliloti	wild type ecotype R108	root	Inoculated with Sinorhizobium meliloti strain 2011	24h	R108_24hrs_S.meliloti_1 R108_24hrs_S.meliloti_2 R108_24hrs_S.meliloti_3 R108_24hrs_S.meliloti_4	SRR9623303 SRR9623304 SRR9623305 SRR9623306	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_0h_mock	wild type ecotype jemalong cultivar Jester	root	mock	0h	WT_0h_mock_1 WT_0h_mock_2 WT_0h_mock_3 WT_0h_mock_4	SRR9623130 SRR9623131 SRR9623132 SRR9623133	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_0h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	0h	WT_0h_S.meliloti_1 WT_0h_S.meliloti_2 WT_0h_S.meliloti_3 WT_0h_S.meliloti_4	SRR9623134 SRR9623135 SRR9623136 SRR9623137	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_10h_mock	wild type ecotype jemalong cultivar Jester	root	mock	10h	WT_10h_mock_1 WT_10h_mock_2 WT_10h_mock_3 WT_10h_mock_4	SRR9623168 SRR9623169 SRR9623170 SRR9623171	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_10h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	10h	WT_10h_S.meliloti_1 WT_10h_S.meliloti_2 WT_10h_S.meliloti_3 WT_10h_S.meliloti_4	SRR9623172 SRR9623173 SRR9623174 SRR9623175	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_120h_mock	wild type ecotype jemalong cultivar Jester	root	mock	120h	WT_120h_mock_1 WT_120h_mock_2 WT_120h_mock_3 WT_120h_mock_4	SRR9623248 SRR9623249 SRR9623250 SRR9623251	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_120h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	120h	WT_120h_S.meliloti_1 WT_120h_S.meliloti_2 WT_120h_S.meliloti_3 WT_120h_S.meliloti_4	SRR9623252 SRR9623253 SRR9623254 SRR9623255	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_12h_mock	wild type ecotype jemalong cultivar Jester	root	mock	12h	WT_12h_mock_1 WT_12h_mock_2 WT_12h_mock_3 WT_12h_mock_4 WT_12h_mock_5	SRR9623176 SRR9623177 SRR9623178 SRR9623179 SRR9623180	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_12h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	12h	WT_12h_S.meliloti_1 WT_12h_S.meliloti_2 WT_12h_S.meliloti_3 WT_12h_S.meliloti_4	SRR9623181 SRR9623182 SRR9623183 SRR9623184	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_14h_mock	wild type ecotype jemalong cultivar Jester	root	mock	14h	WT_14h_mock_1 WT_14h_mock_2 WT_14h_mock_3 WT_14h_mock_4	SRR9623185 SRR9623186 SRR9623187 SRR9623188	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_14h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	14h	WT_14h_S.meliloti_1 WT_14h_S.meliloti_2 WT_14h_S.meliloti_3 WT_14h_S.meliloti_4 WT_14h_S.meliloti_5	SRR9623189 SRR9623190 SRR9623191 SRR9623192 SRR9623193	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_168h_mock	wild type ecotype jemalong cultivar Jester	root	mock	168h	WT_168h_mock_1 WT_168h_mock_2 WT_168h_mock_3 WT_168h_mock_4	SRR9623256 SRR9623257 SRR9623258 SRR9623259	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_168h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	168h	WT_168h_S.meliloti_1 WT_168h_S.meliloti_2 WT_168h_S.meliloti_3 WT_168h_S.meliloti_4	SRR9623260 SRR9623261 SRR9623262 SRR9623263	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_16h_mock	wild type ecotype jemalong cultivar Jester	root	mock	16h	WT_16h_mock_1 WT_16h_mock_2 WT_16h_mock_3 WT_16h_mock_4 WT_16h_mock_5	SRR9623194 SRR9623195 SRR9623196 SRR9623197 SRR9623198	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_16h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	16h	WT_16h_S.meliloti_1 WT_16h_S.meliloti_2 WT_16h_S.meliloti_3 WT_16h_S.meliloti_4 WT_16h_S.meliloti_5	SRR9623199 SRR9623200 SRR9623201 SRR9623202 SRR9623203	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_24h_mock	wild type ecotype jemalong cultivar Jester	root	mock	24h	WT_24h_mock_1 WT_24h_mock_2 WT_24h_mock_3 WT_24h_mock_4	SRR9623204 SRR9623205 SRR9623206 SRR9623207	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_24h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	24h	WT_24h_S.meliloti_1 WT_24h_S.meliloti_2 WT_24h_S.meliloti_3 WT_24h_S.meliloti_4	SRR9623208 SRR9623209 SRR9623210 SRR9623211	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_2h_mock	wild type ecotype jemalong cultivar Jester	root	mock	2h	WT_2h_mock_1 WT_2h_mock_2 WT_2h_mock_3 WT_2h_mock_4 WT_2h_mock_5 WT_2h_mock_6	SRR9623138 SRR9623139 SRR9623140 SRR9623141 SRR9623142 SRR9623143	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_2h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	2h	WT_2h_S.meliloti_1 WT_2h_S.meliloti_2 WT_2h_S.meliloti_3 WT_2h_S.meliloti_4 WT_2h_S.meliloti_5 WT_2h_S.meliloti_6	SRR9623144 SRR9623145 SRR9623146 SRR9623147 SRR9623148 SRR9623149	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_36h_mock	wild type ecotype jemalong cultivar Jester	root	mock	36h	WT_36h_mock_1 WT_36h_mock_2 WT_36h_mock_3 WT_36h_mock_4	SRR9623216 SRR9623217 SRR9623218 SRR9623219	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_36h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	36h	WT_36h_S.meliloti_1 WT_36h_S.meliloti_2 WT_36h_S.meliloti_3 WT_36h_S.meliloti_4	SRR9623212 SRR9623213 SRR9623214 SRR9623215	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_48h_mock	wild type ecotype jemalong cultivar Jester	root	mock	48h	WT_48h_mock_1 WT_48h_mock_2 WT_48h_mock_3 WT_48h_mock_4 WT_48h_mock_5 WT_48h_mock_6	SRR9623226 SRR9623227 SRR9623228 SRR9623229 SRR9623230 SRR9623231	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_48h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	48h	WT_48h_S.meliloti_1 WT_48h_S.meliloti_2 WT_48h_S.meliloti_3 WT_48h_S.meliloti_4 WT_48h_S.meliloti_5 WT_48h_S.meliloti_6	SRR9623220 SRR9623221 SRR9623222 SRR9623223 SRR9623224 SRR9623225	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_4h_mock	wild type ecotype jemalong cultivar Jester	root	mock	4h	WT_4h_mock_1 WT_4h_mock_2 WT_4h_mock_3 WT_4h_mock_4 WT_4h_mock_5	SRR9623150 SRR9623151 SRR9623152 SRR9623153 SRR9623154	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_4h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	4h	WT_4h_S.meliloti_1 WT_4h_S.meliloti_2 WT_4h_S.meliloti_3 WT_4h_S.meliloti_4 WT_4h_S.meliloti_5	SRR9623155 SRR9623156 SRR9623157 SRR9623158 SRR9623159	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_72h_mock	wild type ecotype jemalong cultivar Jester	root	mock	72h	WT_72h_mock_1 WT_72h_mock_2 WT_72h_mock_3 WT_72h_mock_4	SRR9623236 SRR9623237 SRR9623238 SRR9623239	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_72h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	72h	WT_72h_S.meliloti_1 WT_72h_S.meliloti_2 WT_72h_S.meliloti_3 WT_72h_S.meliloti_4	SRR9623232 SRR9623233 SRR9623234 SRR9623235	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_8h_mock	wild type ecotype jemalong cultivar Jester	root	mock	8h	WT_8h_mock_1 WT_8h_mock_2 WT_8h_mock_3 WT_8h_mock_4	SRR9623160 SRR9623161 SRR9623162 SRR9623163	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_8h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	8h	WT_8h_S.meliloti_1 WT_8h_S.meliloti_2 WT_8h_S.meliloti_3 WT_8h_S.meliloti_4	SRR9623164 SRR9623165 SRR9623166 SRR9623167	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_96h_mock	wild type ecotype jemalong cultivar Jester	root	mock	96h	WT_96h_mock_1 WT_96h_mock_2 WT_96h_mock_3 WT_96h_mock_4	SRR9623244 SRR9623245 SRR9623246 SRR9623247	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
WT_96h_S.meliloti	wild type ecotype jemalong cultivar Jester	root	Inoculated with Sinorhizobium meliloti strain 2011	96h	WT_96h_S.meliloti_1 WT_96h_S.meliloti_2 WT_96h_S.meliloti_3 WT_96h_S.meliloti_4	SRR9623240 SRR9623241 SRR9623242 SRR9623243	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi