LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [M. truncatula (gene)]
  • Detail of Experiment mapped on Medicago truncatula A17 MtV4.0

Details

NameNodule Development 2
DescriptionRNA-seq datasets from LIPM-INRA-CNRS were collected from root nodules at 15 dpi after inoculation with S. meliloti.
ContactLIPM-INRA-CNRS (weblipm@toulouse.inra.fr)
XrefPRJNA213402
Reference
Conditions5
SpeciesMedicago truncatula
Metadata export .CSV   .JSON

Analysis

Mapped Genomes MtrunA17r5.0     MtV4.0    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
MtSm-RbmL-IZ A17 22 days after germination + 15 days post inoculation root nodule ammonium nitrate supplemented;
Inoculation with the S. meliloti 2011 strain GMI11495 (4 days in N free prior to inoculation) 		10 m MNH4NO3 18 days;
22 days
  • MtSm-RbmL-IZ_1
  • MtSm-RbmL-IZ_2
  • MtSm-RbmL-IZ_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
MtSm-RbmL-ZI A17 22 days after germination + 15 days post inoculation root nodule ammonium nitrate supplemented;
Inoculation with the S. meliloti 2011 strain GMI11495 (4 days in N free prior to inoculation) 		10 m MNH4NO3 18 days;
22 days
  • MtSm-RbmL-ZI_1
  • MtSm-RbmL-ZI_2
  • MtSm-RbmL-ZI_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
MtSm-RbmL-ZIId A17 22 days after germination + 15 days post inoculation root nodule ammonium nitrate supplemented;
Inoculation with the S. meliloti 2011 strain GMI11495 (4 days in N free prior to inoculation) 		10 m MNH4NO3 18 days;
22 days
  • MtSm-RbmL-ZIId_1
  • MtSm-RbmL-ZIId_2
  • MtSm-RbmL-ZIId_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
MtSm-RbmL-ZIII A17 22 days after germination + 15 days post inoculation root nodule ammonium nitrate supplemented;
Inoculation with the S. meliloti 2011 strain GMI11495 (4 days in N free prior to inoculation) 		10 m MNH4NO3 18 days;
22 days
  • MtSm-RbmL-ZIII_1
  • MtSm-RbmL-ZIII_2
  • MtSm-RbmL-ZIII_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
MtSm-RbmL-ZIIp A17 22 days after germination + 15 days post inoculation root nodule ammonium nitrate supplemented;
Inoculation with the S. meliloti 2011 strain GMI11495 (4 days in N free prior to inoculation) 		10 m MNH4NO3 18 days;
22 days
  • MtSm-RbmL-ZIIp_1
  • MtSm-RbmL-ZIIp_2
  • MtSm-RbmL-ZIIp_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi