| Name | transcriptome profile of plant roots treated with Nod factors |
|---|---|
| Description | This experiment was part of a larger study to elucidate the early effects of Nod factor treatment on the Medicago truncatula phosphoproteome, transcriptome and metabolome in wildtype and two mutant strains. In this experiment, RNA-Seq was used to measure transcriptional changes in plant roots treated +/- Nod factors for 1 hr. RNA was extracted and sequenced from three biological replicates of each treatment condition in wildtype as well as mutants in nfp and dmi3, two genes known to be involved in the response pathway. |
| Contact | University of Wisconsin-Madison |
| Xref | PRJNA188381 |
| Reference | |
| Conditions | 6 |
| Species | Medicago truncatula |
| Metadata export | .CSV .JSON |
| Mapped Genomes | MtrunA17r5.0 MtV4.0 |
|---|---|
| Expression Analysis | Expression Profile / Differential Expression / Co-expression |
| Name | Genotype | Mutation | Stage | Tissue | Treatment | Level | Time | Samples | Xref | Download alignments |
|---|---|---|---|---|---|---|---|---|---|---|
| 177_dmi3_+NF | Jemalong J5 | dmi3 (TRV25) | seedling | root | Nod factor treatment | 1hr |
|
.bam
.bai
.csi
.bam .bai .csi .bam .bai .csi |
||
| 177_dmi3_ctrl | Jemalong J5 | dmi3 (TRV25) | seedling | root | control | 1hr |
|
.bam
.bai
.csi
.bam .bai .csi .bam .bai .csi |
||
| 177_nfp_+NF | Jemalong A17 | nfp (C31) | seedling | root | Nod factor treatment | 1hr |
|
.bam
.bai
.csi
.bam .bai .csi .bam .bai .csi |
||
| 177_nfp_ctrl | Jemalong A17 | nfp (C31) | seedling | root | control | 1hr |
|
.bam
.bai
.csi
.bam .bai .csi .bam .bai .csi |
||
| 177_wt_+NF | Jemalong A17 | wt | seedling | root | Nod factor treatment | 1hr |
|
.bam
.bai
.csi
.bam .bai .csi .bam .bai .csi |
||
| 177_wt_ctrl | Jemalong A17 | wt | seedling | root | control | 1hr |
|
.bam
.bai
.csi
.bam .bai .csi .bam .bai .csi |