LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

Name	Plant Organs
Description	RNA-seq libraries were prepared from different plant organs: root, leaf, leaf bud, pod, flower, petiole, and bare stalk collected at different stages.
Contact	Ivone Torres-Jerez (itjerez@noble.org)
Xref
Reference
Conditions	9
Species	Medicago truncatula
Metadata export	.CSV .JSON

Mapped Genomes	MtrunA17r5.0 MtV4.0
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Name	Genotype	Stage	Tissue	Samples	Download alignments
Mtbud	A17	5 weeks after transplanting	bud	Mtbud_1 Mtbud_2 Mtbud_3	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Mtlargepod	A17	Fully grown green and yellow pods containing seeds harvested at 8 - 10 weeks	fruit	Mtlargepod_1 Mtlargepod_2 Mtlargepod_3	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Mtleafblade	A17	5 weeks after transplanting	leaf	Mtleafblade_1 Mtleafblade_2 Mtleafblade_3	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Mtmedpod	A17	Medium-sized Pods containing seeds harvested at 8 - 10 weeks	fruit	Mtmedpod_1 Mtmedpod_2 Mtmedpod_3	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Mtopenflower	A17	Fully opened flower at 6-7 weeks	flower	Mtopenflower_1 Mtopenflower_2 Mtopenflower_3	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Mtpetiole	A17	5 weeks after transplanting	petiole	Mtpetiole_1 Mtpetiole_2 Mtpetiole_3	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Mtroot	A17	5 weeks after transplanting	root	Mtroot_1 Mtroot_2 Mtroot_3	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Mtsmallpod	A17	Pods containing seeds just forming at 8-10 weeks	fruit	Mtsmallpod_1 Mtsmallpod_2 Mtsmallpod_3	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Mtstem	A17	5 weeks after transplanting	stalk	Mtstem_1 Mtstem_2 Mtstem_3	.bam .bai .csi .bam .bai .csi .bam .bai .csi