LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

[M. truncatula (gene)]
Detail of Experiment mapped on Medicago truncatula A17 MtV4.0

Details

Name	effects of rhizobia and mycorrhizal fungi on expression in roots of model legume
Description	Study examines effects of rhizobia and mycorrhizal fungi on genome-wide expression in roots of model legume as well as the effects of rhizobia on mycorrhizal gene expression.
Contact	University of Miami
Xref	PRJNA328180
Reference	Afkhami ME & Stinchcombe JR. 2016;
Conditions	4
Species	Medicago truncatula
Metadata export	.CSV .JSON

Analysis

Mapped Genomes	MtrunA17r5.0 MtV4.0
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Conditions

Name	Genotype	Mutation	Stage	Tissue	Treatment	Level	Time	Samples	Xref	Download alignments
M-R-	JA17		7 weeks	roots	no mycorrhizal fungi or rhizobia			M-R-_1 M-R-_2 M-R-_3 M-R-_4 M-R-_5 M-R-_6 M-R-_7 M-R-_8	SRR3997852 SRR3997853 SRR3997864 SRR3997877 SRR3997879 SRR3997880 SRR3997882 SRR3997883	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
M-R+	JA17		7 weeks	roots	no mycorrhizal fungi but rhizobia present			M-R+_1 M-R+_2 M-R+_3 M-R+_4 M-R+_5 M-R+_6 M-R+_7 M-R+_8	SRR3997884 SRR3997886 SRR3997854 SRR3997855 SRR3997856 SRR3997857 SRR3997858 SRR3997859	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
M+R-	JA17		7 weeks	roots	mycorrhizal fungi present but no rhizobia			M+R-_1 M+R-_2 M+R-_3 M+R-_4 M+R-_5 M+R-_6 M+R-_7	SRR3997860 SRR3997861 SRR3997862 SRR3997863 SRR3997865 SRR3997866 SRR3997867	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
M+R+	JA17		7 weeks	roots	mycorrhizal fungi and rhizobia present			M+R+_1 M+R+_2 M+R+_3 M+R+_4 M+R+_5 M+R+_6 M+R+_7 M+R+_8	SRR3997869 SRR3997870 SRR3997872 SRR3997873 SRR3997874 SRR3997875 SRR3997876 SRR3997878	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi