LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

Name	Macronutrient Deficiencies 2
Description	RNA-seq libraries were prepared from roots and shoots of plants grown under full nutrition, and with no nitrogen or phosphorus collected after 22 days of germination.
Contact	Pooja Pandey-Pant (pppant@noble.org)
Xref	PRJNA391290
Reference	de Bang TC et al . 2017;
Conditions	6
Species	Medicago truncatula
Metadata export	.CSV .JSON

Mapped Genomes	MtrunA17r5.0 MtV4.0
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Name	Genotype	Stage	Tissue	Treatment	Level	Time	Samples	Xref	Download alignments
Pooja-FN_Shoot	A17	22 days after germination	shoot	Full Nutrition	0.6 mM P; 1.2 mM N	beginning at 14 days	Pooja-FN_Shoot_1 Pooja-FN_Shoot_3	SRR5732303 SRR5732307	.bam .bai .csi .bam .bai .csi
Pooja-FN-Root	A17	22 days after germination	root	Full Nutrition	0.6 mM P; 1.2 mM N	beginning at 14 days	Pooja-FN-Root_1 Pooja-FN-Root_2 Pooja-FN-Root_3	SRR5732302 SRR5732301 SRR5732300	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Pooja-NoN_Root	A17	22 days after germination	root	No Nitrogen	0 µM N	beginning at 14 days	Pooja-NoN_Root_1 Pooja-NoN_Root_2 Pooja-NoN_Root_3	SRR5732299 SRR5732298 SRR5732297	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Pooja-NoN_Shoot	A17	22 days after germination	shoot	No Nitrogen	0 µM N	beginning at 14 days	Pooja-NoN_Shoot_1 Pooja-NoN_Shoot_3	SRR5732306 SRR5732309	.bam .bai .csi .bam .bai .csi
Pooja-NoP_Root	A17	22 days after germination	root	No Phosphorous	0 µM P	beginning at 14 days	Pooja-NoP_Root_1 Pooja-NoP_Root_2 Pooja-NoP_Root_3	SRR5732296 SRR5732295 SRR5732304	.bam .bai .csi .bam .bai .csi .bam .bai .csi
Pooja-NoP_Shoot	A17	22 days after germination	shoot	No Phosphorous	0 µM P	beginning at 14 days	Pooja-NoP_Shoot_1 Pooja-NoP_Shoot_3	SRR5732308 SRR5732305	.bam .bai .csi .bam .bai .csi