LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [M. truncatula (gene)]
  • Detail of Experiment mapped on Medicago truncatula A17 MtV4.0

Details

NameTranscriptomic changes in Medicago truncatula root nodules during drought stress
DescriptionRNA was obtained from Medicago truncatula non-inoculated roots (R) and root nodules (inoculated with Sinorhizobium meliloti) either subjected to drought for two (T2) or four (T4) days, or well-watered control (T0). Two biological replicates for each sample was obtained. Each biological replicate consisted of roots or nodules harvested from 10-12 plants. RNA obtained from root nodules contained both plant and bacterial RNA.
ContactWeronika Czarnocka (weronika_czarnocka@sggw.pl)
XrefPRJNA524006
Reference
Conditions4
SpeciesMedicago truncatula
Metadata export .CSV   .JSON

Analysis

Mapped Genomes MtrunA17r5.0     MtV4.0    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
Mt.nodule.T0 Jemalong A17 8-week-old root nodule Inoculated with S. meliloti;
well-watered control nodules (T0)
  • Mt.nodule.T0_1
  • Mt.nodule.T0_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Mt.nodule.T2 Jemalong A17 8-week-old root nodule Inoculated with S. meliloti;
drought for two (T2) days
  • Mt.nodule.T2_1
  • Mt.nodule.T2_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Mt.nodule.T4 Jemalong A17 8-week-old root nodule drought for four (T4) days;
Inoculated with S. meliloti
  • Mt.nodule.T4_1
  • Mt.nodule.T4_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Mt.root.T0 Jemalong A17 8-week-old root Medicago truncatula non-inoculated roots;
well-watered control nodules (T0)
  • Mt.root.T0_1
  • Mt.root.T0_2
 .bam    .bai    .csi   
.bam    .bai    .csi