LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

Details

Name	Macronutrient Deficiencies 1
Description	RNA-seq libraries were prepared from roots and shoots of plants grown under sulfur (S), potassium (K), nitrogen (N) and phosphorus depleted conditions. The response to persistent deficiency was tested by growing the plants for 3 weeks under full nutrition (FN) or under deficiency of N, P, K or S. Additional samples were collected from plants re-supplied with FN for 6 h following the nutrient-deficiency treatment.
Contact	Thomas de Bang (tdb@plen.ku.dk)
Xref	PRJNA388818
Reference	de Bang TC et al . 2017;
Conditions	24
Species	Medicago truncatula
Metadata export	.CSV .JSON

Analysis

Mapped Genomes	MtrunA17r5.0 MtV4.0
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Conditions

Name	Genotype	Stage	Tissue	Treatment	Level	Time	Samples	Xref	Download alignments
K-1000xK-Root	A17	21 days after germination	root	Low Potassium	2.45 µM K	21 days	K-1000xK-Root_1 K-1000xK-Root_2 K-1000xK-Root_3	SRR5721274 SRR5721275 SRR5721281	.bam .bai .csi .bam .bai .csi .bam .bai .csi
K-1000xK-Shoot	A17	21 days after germination	shoot	Low Potassium	2.45 µM K	21 days	K-1000xK-Shoot_1 K-1000xK-Shoot_2 K-1000xK-Shoot_3	SRR5721282 SRR5721247 SRR5721241	.bam .bai .csi .bam .bai .csi .bam .bai .csi
K-FN-Root	A17	21 days after germination	root	Full Nutrition	Full Potassium (2.45 mM K)	21 days	K-FN-Root_1 K-FN-Root_2 K-FN-Root_3	SRR5721250 SRR5721248 SRR5721230	.bam .bai .csi .bam .bai .csi .bam .bai .csi
K-FN-Shoot	A17	21 days after germination	shoot	Full Nutrition	Full Potassium (2.45 mM K)	21 days	K-FN-Shoot_1 K-FN-Shoot_2 K-FN-Shoot_3	SRR5721223 SRR5721237 SRR5721233	.bam .bai .csi .bam .bai .csi .bam .bai .csi
K-Re-supply-Root	A17	21 days after germination	root	Low Potassium; K Re-supply	2.45 µM K; 2.45 mM K	21 days; 4x 1.5 Hours	K-Re-supply-Root_1 K-Re-supply-Root_2 K-Re-supply-Root_3	SRR5721267 SRR5721266 SRR5721225	.bam .bai .csi .bam .bai .csi .bam .bai .csi
K-Re-supply-Shoot	A17	21 days after germination	shoot	Low Potassium; K Re-supply	2.45 µM K; 2.45 mM K	21 days; 4x 1.5 Hours	K-Re-supply-Shoot_1 K-Re-supply-Shoot_2 K-Re-supply-Shoot_3	SRR5721227 SRR5721283 SRR5721235	.bam .bai .csi .bam .bai .csi .bam .bai .csi
N-10xN-Root	A17	21 days after germination	root	Low Nitrogen	0.2 mM N	21 days	N-10xN-Root_1 N-10xN-Root_2 N-10xN-Root_3	SRR5721222 SRR5721226 SRR5721220	.bam .bai .csi .bam .bai .csi .bam .bai .csi
N-10xN-Shoot	A17	21 days after germination	shoot	Low Nitrogen	0.2 mM N	21 days	N-10xN-Shoot_1 N-10xN-Shoot_2 N-10xN-Shoot_3	SRR5721221 SRR5721231 SRR5721232	.bam .bai .csi .bam .bai .csi .bam .bai .csi
N-FN-Root	A17	21 days after germination	root	Full Nutrition	Full Nitrogen (2.0 mM N)	21 days	N-FN-Root_1 N-FN-Root_2 N-FN-Root_3	SRR5721268 SRR5721271 SRR5721269	.bam .bai .csi .bam .bai .csi .bam .bai .csi
N-FN-Shoot	A17	21 days after germination	shoot	Full Nutrition	Full Nitrogen (2.0 mM N)	21 days	N-FN-Shoot_1 N-FN-Shoot_2 N-FN-Shoot_3	SRR5721255 SRR5721246 SRR5721234	.bam .bai .csi .bam .bai .csi .bam .bai .csi
N-Re-supply-Root	A17	21 days after germination	root	Low Nitrogen; N Re-supply	0.2 mM N; 2.0 mM N	21 days; 4x 1.5 Hours	N-Re-supply-Root_1 N-Re-supply-Root_2 N-Re-supply-Root_3	SRR5721252 SRR5721261 SRR5721273	.bam .bai .csi .bam .bai .csi .bam .bai .csi
N-Re-supply-Shoot	A17	21 days after germination	shoot	Low Nitrogen; N Re-supply	0.2 mM N; 2.0 mM N	21 days; 4x 1.5 Hours	N-Re-supply-Shoot_1 N-Re-supply-Shoot_2 N-Re-supply-Shoot_3	SRR5721251 SRR5721228 SRR5721229	.bam .bai .csi .bam .bai .csi .bam .bai .csi
P-100xP-Root	A17	21 days after germination	root	Low Phosphorous	6.0 µM P	21 days	P-100xP-Root_1 P-100xP-Root_2 P-100xP-Root_3	SRR5721239 SRR5721240 SRR5721238	.bam .bai .csi .bam .bai .csi .bam .bai .csi
P-100xP-Shoot	A17	21 days after germination	shoot	Low Phosphorous	6.0 µM P	21 days	P-100xP-Shoot_1 P-100xP-Shoot_2 P-100xP-Shoot_3	SRR5721242 SRR5721244 SRR5721245	.bam .bai .csi .bam .bai .csi .bam .bai .csi
P-FN-Root	A17	21 days after germination	root	Full Nutrition	Full Phosphorous (0.6 mM P); Full Sulfur (0.6 mM S)	21 days	P-FN-Root_1 P-FN-Root_2 P-FN-Root_3	SRR5721249 SRR5721243 SRR5721277	.bam .bai .csi .bam .bai .csi .bam .bai .csi
P-FN-Shoot	A17	21 days after germination	shoot	Full Nutrition	Full Phosphorous (0.6 mM P); Full Sulfur (0.6 mM S)	21 days	P-FN-Shoot_1 P-FN-Shoot_2 P-FN-Shoot_3	SRR5721236 SRR5721285 SRR5721286	.bam .bai .csi .bam .bai .csi .bam .bai .csi
P-Re-supply-Root	A17	21 days after germination	root	Low Phosphorous; P Re-supply	6.0 µM P; 0.6 mM P	21 days; 4x 1.5 Hours	P-Re-supply-Root_1 P-Re-supply-Root_2 P-Re-supply-Root_3	SRR5721287 SRR5721284 SRR5721290	.bam .bai .csi .bam .bai .csi .bam .bai .csi
P-Re-supply-Shoot	A17	21 days after germination	shoot	Low Phosphorous; P Re-supply	6.0 µM P; 0.6 mM P	21 days; 4x 1.5 Hours	P-Re-supply-Shoot_1 P-Re-supply-Shoot_2 P-Re-supply-Shoot_3	SRR5721291 SRR5721288 SRR5721289	.bam .bai .csi .bam .bai .csi .bam .bai .csi
S-100xS-Root	A17	21 days after germination	root	Low Sulfur	6.0 µM S	21 days	S-100xS-Root_1 S-100xS-Root_2 S-100xS-Root_3	SRR5721278 SRR5721280 SRR5721257	.bam .bai .csi .bam .bai .csi .bam .bai .csi
S-100xS-Shoot	A17	21 days after germination	shoot	Low Sulfur	6.0 µM S	21 days	S-100xS-Shoot_1 S-100xS-Shoot_2 S-100xS-Shoot_3	SRR5721256 SRR5721254 SRR5721253	.bam .bai .csi .bam .bai .csi .bam .bai .csi
S-FN-Root	A17	21 days after germination	root	Full Nutrition	Full Phosphorous (0.6 mM P); Full Sulfur (0.6 mM S)	21 days	S-FN-Root_1 S-FN-Root_2 S-FN-Root_3	SRR5721260 SRR5721263 SRR5721259	.bam .bai .csi .bam .bai .csi .bam .bai .csi
S-FN-Shoot	A17	21 days after germination	shoot	Full Nutrition	Full Phosphorous (0.6 mM P); Full Sulfur (0.6 mM S)	21 days	S-FN-Shoot_1 S-FN-Shoot_2 S-FN-Shoot_3	SRR5721258 SRR5721265 SRR5721264	.bam .bai .csi .bam .bai .csi .bam .bai .csi
S-Re-supply-Root	A17	21 days after germination	root	Low Sulfur; S Re-supply	6.0 µM S; 0.6 mM S	21 days; 4x 1.5 Hours	S-Re-supply-Root_1 S-Re-supply-Root_2 S-Re-supply-Root_3	SRR5721276 SRR5721262 SRR5721279	.bam .bai .csi .bam .bai .csi .bam .bai .csi
S-Re-supply-Shoot	A17	21 days after germination	shoot	Low Sulfur; S Re-supply	6.0 µM S; 0.6 mM S	21 days; 4x 1.5 Hours	S-Re-supply-Shoot-1 S-Re-supply-Shoot-2 S-Re-supply-Shoot-3	SRR5721224 SRR5721270 SRR5721272	.bam .bai .csi .bam .bai .csi .bam .bai .csi