LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [M. truncatula (gene)]
  • Detail of Experiment mapped on Medicago truncatula A17 MtV4.0

Details

Nameinoculation of symbiotic fungi with medicago truncatula root and nodule
DescriptionRoot and/or nodule tissues of four Medicago truncatula accessions were subjected to RNA-Seq. Three treatments were performed for each accession: 14 days post inoculation (dpi) using Sinorhizobium meliloti (KH46c) strain, 14 days dpi using Sinorhizobium Medicae (WSM419) strain as well as uninoculated root tissue as control. Three replications were done for each treatment.
ContactUniversity of Minnesota
XrefPRJNA327225
Reference
  • unpublished;
Conditions12
SpeciesMedicago truncatula
Metadata export .CSV   .JSON

Analysis

Mapped Genomes MtrunA17r5.0     MtV4.0    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
HM034_control HM034 14 dpi root Uninoculated
  • HM034_control_1
  • HM034_control_2
  • HM034_control_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM034_smedicae HM034 14 dpi nodule Inoculated by Sinorhizobium medicae (WSM419)
  • HM034_smedicae_1
  • HM034_smedicae_2
  • HM034_smedicae_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM034_smeliloti HM034 14 dpi nodule Inoculated by Sinorhizobium meliloti (KH46c)
  • HM034_smeliloti_1
  • HM034_smeliloti_2
  • HM034_smeliloti_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM056_control HM056 14 dpi root Uninoculated
  • HM056_control_1
  • HM056_control_2
  • HM056_control_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM056_smedicae HM056 14 dpi nodule Inoculated by Sinorhizobium medicae (WSM419)
  • HM056_smedicae_1
  • HM056_smedicae_2
  • HM056_smedicae_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM056_smeliloti HM056 14 dpi nodule Inoculated by Sinorhizobium meliloti (KH46c)
  • HM056_smeliloti_1
  • HM056_smeliloti_2
  • HM056_smeliloti_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM101_control HM101 14 dpi root Uninoculated
  • HM101_control_1
  • HM101_control_2
  • HM101_control_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM101_smedicae HM101 14 dpi nodule Inoculated by Sinorhizobium medicae (WSM419)
  • HM101_smedicae_1
  • HM101_smedicae_2
  • HM101_smedicae_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM101_smeliloti HM101 14 dpi nodule Inoculated by Sinorhizobium meliloti (KH46c)
  • HM101_smeliloti_1
  • HM101_smeliloti_2
  • HM101_smeliloti_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM340_control HM340 14 dpi root Uninoculated
  • HM340_control_1
  • HM340_control_2
  • HM340_control_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM340_smedicae HM340 14 dpi nodule Inoculated by Sinorhizobium medicae (WSM419)
  • HM340_smedicae_1
  • HM340_smedicae_2
  • HM340_smedicae_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
HM340_smeliloti HM340 14 dpi nodule Inoculated by Sinorhizobium meliloti (KH46c)
  • HM340_smeliloti_1
  • HM340_smeliloti_2
  • HM340_smeliloti_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi