LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [M. truncatula (transcript)]
  • Detail of Experiment mapped on Medicago truncatula A17 MtV4.0

Details

NameA17 and the ethylene insensitive sickle mutant interacting with the fungal root pathogen, Rhizoctonia solani AG8
DescriptionThis study compares the response of wild type (A17) and ethylene insensitive mutant (sickle) lines of the model legume Medicago truncatula to infection by the root-infecting necrotrophic fungal pathogen, Rhizoctonia solani AG8 (WAC10335). Two time points were taken, 2 and 7 days after inoculation along with corresponding mock-treated controls.
ContactCSIRO Agriculture and Food
XrefPRJEB19425
Reference
Conditions8
SpeciesMedicago truncatula
Metadata export .CSV   .JSON

Analysis

Mapped Genomes MtrunA17r5.0     MtV4.0    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
A17_Mock_2dpi A17 root Mock 2dpi
  • A17_Mock_2dpi_1
  • A17_Mock_2dpi_2
  • A17_Mock_2dpi_3
  • ERR1830517 
  • ERR1830518 
  • ERR1830519 
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
A17_Mock_7dpi A17 root Mock 7dpi
  • A17_Mock_7dpi_1
  • A17_Mock_7dpi_2
  • A17_Mock_7dpi_3
  • ERR1830514 
  • ERR1830515 
  • ERR1830516 
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
A17_R.solani_inoculated_2dpi A17 root R.solani inoculated 2dpi
  • A17_R.solani_inoculated_2dpi_1
  • A17_R.solani_inoculated_2dpi_2
  • A17_R.solani_inoculated_2dpi_3
  • ERR1830520 
  • ERR1830521 
  • ERR1830522 
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
A17_R.solani_inoculated_7dpi A17 root R.solani inoculated 7dpi
  • A17_R.solani_inoculated_7dpi_1
  • A17_R.solani_inoculated_7dpi_2
  • A17_R.solani_inoculated_7dpi_3
  • ERR1830523 
  • ERR1830524 
  • ERR1830525 
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
skl_Mock_2dpi sickle mutant root Mock 2dpi
  • skl_Mock_2dpi_1
  • skl_Mock_2dpi_2
  • skl_Mock_2dpi_3
  • ERR1830526 
  • ERR1830527 
  • ERR1830528 
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
skl_Mock_7dpi sickle mutant root Mock 7dpi
  • skl_Mock_7dpi_1
  • skl_Mock_7dpi_2
  • skl_Mock_7dpi_3
  • ERR1830529 
  • ERR1830530 
  • ERR1830531 
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
skl_R.solani_inoculated_2dpi sickle mutant root R.solani inoculated 2dpi
  • skl_R.solani_inoculated_2dpi_1
  • skl_R.solani_inoculated_2dpi_2
  • skl_R.solani_inoculated_2dpi_3
  • ERR1830532 
  • ERR1830533 
  • ERR1830534 
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
skl_R.solani_inoculated_7dpi sickle mutant root R.solani inoculated 7dpi
  • skl_R.solani_inoculated_7dpi_1
  • skl_R.solani_inoculated_7dpi_2
  • skl_R.solani_inoculated_7dpi_3
  • ERR1830535 
  • ERR1830536 
  • ERR1830537 
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi