LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [M. truncatula (transcript)]
  • Detail of Experiment mapped on Medicago truncatula A17 MtV4.0

Details

NameSymbiotic Interactions 3
DescriptionPublicly available RNA-seq dataset from INRA-CNRS was collected from root epidermis after 4 or 24h treatment with Nod factors or mock treatment in n order to analyze very early symbiotic stages.
ContactPascal Gamas (pascal.gamas@toulouse.inra.fr)
XrefPRJNA283476
Reference
Conditions4
SpeciesMedicago truncatula
Metadata export .CSV   .JSON

Analysis

Mapped Genomes MtrunA17r5.0     MtV4.0    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
Rbm_Mock_24H A17 3 day old seedlings root epidermis mock-treated no Nod factor 24h
  • Rbm_Mock_24H_1
  • Rbm_Mock_24H_2
  • Rbm_Mock_24H_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Rbm_Mock_4H A17 3 day old seedlings root epidermis mock-treated no Nod factor 4h
  • Rbm_Mock_4H_1
  • Rbm_Mock_4H_2
  • Rbm_Mock_4H_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Rbm_NF_24H A17 3 day old seedlings root epidermis treated with symbiotic lipochitooligosaccharides (LCOs) 1E-08 M Nod factor 24h
  • Rbm_NF_24H_1
  • Rbm_NF_24H_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Rbm_NF_4H A17 3 day old seedlings root epidermis treated with symbiotic lipochitooligosaccharides (LCOs) 1E-08 M Nod factor 4h
  • Rbm_NF_4H_1
  • Rbm_NF_4H_2
  • Rbm_NF_4H_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi