LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [M. truncatula (gene)]
  • Detail of Experiment mapped on Medicago truncatula A17 MtV4.0

Details

NameSymbiotic Interactions 2
DescriptionM. truncatula plants (wild type and SUNN mutant) were inoculated or not with the arbuscular mycorrhizal fungus Rhizophagus irregularis. RNA-seq libraries were prepared from root and shoot tissues.
ContactThomas de Bang (tdb@plen.ku.dk)
XrefPRJNA590945
Reference
Conditions8
SpeciesMedicago truncatula
Metadata export .CSV   .JSON

Analysis

Mapped Genomes MtrunA17r5.0     MtV4.0    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
SUNN_Control_Root A17 SUNN 18 days after planting root Whole root from un-colonized A17 sunn mutant Sterile soil At planting
  • SUNN_Control_Root_1
  • SUNN_Control_Root_2
  • SUNN_Control_Root_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
SUNN_Control_Shoot A17 SUNN 18 days after planting shoot Whole shoot from un-colonized A17 sunn mutant Sterile soil At planting
  • SUNN_Control_Shoot_1
  • SUNN_Control_Shoot_2
  • SUNN_Control_Shoot_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
SUNN_Mycorrhiza_Root A17 SUNN 18 days after planting root Whole root from mycorrhiza colonized A17 sunn mutant 10 % (w/w) soil inoculum At planting
  • SUNN_Mycorrhiza_Root_1
  • SUNN_Mycorrhiza_Root_2
  • SUNN_Mycorrhiza_Root_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
SUNN_Mycorrhiza_Shoot A17 SUNN 18 days after planting shoot Whole shoot from mycorrhiza colonized A17 sunn mutant 10 % (w/w) soil inoculum At planting
  • SUNN_Mycorrhiza_Shoot_1
  • SUNN_Mycorrhiza_Shoot_2
  • SUNN_Mycorrhiza_Shoot_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Wildtype_Control_Root A17 None 18 days after planting root Whole root from un-colonized A17 wild type Sterile soil At planting
  • Wildtype_Control_Root_1
  • Wildtype_Control_Root_2
  • Wildtype_Control_Root_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Wildtype_Control_Shoot A17 None 18 days after planting shoot Whole shoot from un-colonized A17 wild type Sterile soil At planting
  • Wildtype_Control_Shoot_1
  • Wildtype_Control_Shoot_2
  • Wildtype_Control_Shoot_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Wildtype_Mycorrhiza_Root A17 None 18 days after planting root Whole root from mycorrhiza colonized A17 wild type 10 % (w/w) soil inoculum At planting
  • Wildtype_Mycorrhiza_Root_1
  • Wildtype_Mycorrhiza_Root_2
  • Wildtype_Mycorrhiza_Root_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Wildtype_Mycorrhiza_Shoot A17 None 18 days after planting shoot Whole shoot from mycorrhiza colonized A17 wild type 10 % (w/w) soil inoculum At planting
  • Wildtype_Mycorrhiza_Shoot_1
  • Wildtype_Mycorrhiza_Shoot_2
  • Wildtype_Mycorrhiza_Shoot_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi