LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [M. truncatula (gene)]
  • Detail of Experiment mapped on Medicago truncatula A17 MtrunA17r5.0

Details

NameTranscriptomic response to Nod Factor treatments on Medicago
DescriptionNGS2013-04: Transcriptomic response to Nod Factor treatments on Medicago Role of the root hair in water and nutrient uptake and the establishment of the nitrogen-fixing symbiotic interaction with rhizobia. Overall design: The RNA was extracted from root hairs of Medicago: control vs treated by nod factors (2 biological replicates)
ContactINRA - CNRS – UEVE
XrefPRJNA281222
Reference
Conditions3
SpeciesMedicago truncatula
Metadata export .CSV   .JSON

Analysis

Mapped Genomes MtrunA17r5.0     MtV4.0    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
Control wild type A17 5 days Root Hairs control 0h
  • Control_1
  • Control_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
NodFactor_20h wild type A17 5 days Root Hairs Nod Factor 20h
  • NodFactor_20h_1
  • NodFactor_20h_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
NodFactor_4h wild type A17 5 days Root Hairs Nod Factor 4h
  • NodFactor_4h_1
  • NodFactor_4h_2
 .bam    .bai    .csi   
.bam    .bai    .csi