LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [M. truncatula (gene)]
  • Detail of Experiment mapped on Medicago truncatula A17 MtV4.0

Details

NameSalt Stress
DescriptionRNA-seq libraries were prepared from roots and shoots of plants grown under salt treatment (NaCl) collected after 25 days.
ContactYun Kang (ykang@noble.org)
Xref
Reference
Conditions8
SpeciesMedicago truncatula
Metadata export .CSV   .JSON

Analysis

Mapped Genomes MtrunA17r5.0     MtV4.0    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
Salt_Root_No_HM198 HM198 25 days old root No Salt
  • Salt_Root_No_HM198_1
  • Salt_Root_No_HM198_2
  • Salt_Root_No_HM198_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Salt_Root_No_HM309 HM309 25 days old root No Salt
  • Salt_Root_No_HM309_1
  • Salt_Root_No_HM309_2
  • Salt_Root_No_HM309_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Salt_Root_Salt_HM198 HM198 25 days old root Salt - NaCl day 10 = 0.5% NaCl; day 15 = 1% NaCl; day 20 = 1.5% NaCl
  • Salt_Root_Salt_HM198_1
  • Salt_Root_Salt_HM198_2
  • Salt_Root_Salt_HM198_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Salt_Root_Salt_HM309 HM309 25 days old root Salt - NaCl day 10 = 0.5% NaCl; day 15 = 1% NaCl; day 20 = 1.5% NaCl
  • Salt_Root_Salt_HM309_1
  • Salt_Root_Salt_HM309_2
  • Salt_Root_Salt_HM309_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Salt_Shoot_No_HM198 HM198 25 days old shoot No Salt
  • Salt_Shoot_No_HM198_1
  • Salt_Shoot_No_HM198_2
  • Salt_Shoot_No_HM198_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Salt_Shoot_No_HM309 HM309 25 days old shoot No Salt
  • Salt_Shoot_No_HM309_1
  • Salt_Shoot_No_HM309_2
  • Salt_Shoot_No_HM309_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Salt_Shoot_Salt_HM198 HM198 25 days old shoot Salt - NaCl day 10 = 0.5% NaCl; day 15 = 1% NaCl; day 20 = 1.5% NaCl
  • Salt_Shoot_Salt_HM198_1
  • Salt_Shoot_Salt_HM198_2
  • Salt_Shoot_Salt_HM198_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
Salt_Shoot_Salt_HM309 HM309 25 days old shoot Salt - NaCl day 10 = 0.5% NaCl; day 15 = 1% NaCl; day 20 = 1.5% NaCl
  • Salt_Shoot_Salt_HM309_1
  • Salt_Shoot_Salt_HM309_2
  • Salt_Shoot_Salt_HM309_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi