LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [M. sativa (transcript)]
  • Detail of Experiment mapped on Medicago sativa CADL MsV1NR

Details

NameTissue specific expression profile of genotype B47 and F56
DescriptionTranscriptome profiling for two alfalfa subspecies, M. sativa ssp. sativa (B47) and M. sativa ssp. falcata (F56). Transcripts from roots, nitrogen-fixing root nodules, leaves, flowers, elongating stem internodes, and post-elongation stem internodes were sequenced using Illumina RNA-seq technology.
ContactUSDA-ARS, Corn Insects and Crop Genetics Research Unit, Ames, IA, 50011, USA. Jamie.ORourke@ars.usda.gov.
Xref
Reference
Conditions12
SpeciesMedicago sativa
Metadata export .CSV   .JSON

Analysis

Mapped Genomes MsV1NR    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
B47_ES B47 elonged stem control
  • B47_ES_1
  • B47_ES_2
  • B47_ES_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
B47_Flower B47 flower control
  • B47_Flower_1
  • B47_Flower_2
  • B47_Flower_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
B47_Leaf B47 leaf control
  • B47_Leaf_1
  • B47_Leaf_2
  • B47_Leaf_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
B47_Nodule B47 nodule control
  • B47_Nodule_1
  • B47_Nodule_2
  • B47_Nodule_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
B47_PES B47 Pre-elonged stem control
  • B47_PES_1
  • B47_PES_2
  • B47_PES_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
B47_Root B47 root control
  • B47_Root_1
  • B47_Root_2
  • B47_Root_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
F56_ES F56 elonged stem control
  • F56_ES_1
  • F56_ES_2
  • F56_ES_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
F56_Flower F56 flower control
  • F56_Flower_1
  • F56_Flower_2
  • F56_Flower_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
F56_Leaf F56 leaf control
  • F56_Leaf_1
  • F56_Leaf_2
  • F56_Leaf_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
F56_Nodule F56 nodule control
  • F56_Nodule_1
  • F56_Nodule_2
  • F56_Nodule_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
F56_PES F56 Pre-elonged stem control
  • F56_PES_1
  • F56_PES_2
  • F56_PES_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
F56_Root F56 root control
  • F56_Root_1
  • F56_Root_2
  • F56_Root_3
.bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi