LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

Name	Medicago sativa RNAseq data of infected with root lesion nematode Pratylenchus penetrans
Description	RNAseq of Medicago sativa, infected with root lesion nematode Pratylenchus penetrans.
Contact	BELTSVILLE AGRICULTURAL RESEARCH CENTER
Xref	PRJNA547347
Reference	Vieira P et al . 2019;
Conditions	4
Species	Medicago sativa
Metadata export	.CSV .JSON

Mapped Genomes	MsV1NR
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Name	Genotype	Stage	Tissue	Samples	Xref	Download alignments
baker_control	baker	seedling	roots	baker_control_1 baker_control_2 baker_control_3 baker_control_4 baker_control_5	SRR9211640 SRR9211639 SRR9211638 SRR9211637 SRR9211656	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
baker_nema	baker	seedling	roots	baker_nema_1 baker_nema_2 baker_nema_3 baker_nema_4 baker_nema_5	SRR9211655 SRR9211654 SRR9211653 SRR9211652 SRR9211651	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
MNGRN16_control	MNGRN16	seedling	roots	MNGRN16_control_1 MNGRN16_control_2 MNGRN16_control_3 MNGRN16_control_4 MNGRN16_control_5	SRR9211646 SRR9211645 SRR9211648 SRR9211647 SRR9211642	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
MNGRN16_nema	MNGRN16	seedling	roots	MNGRN16_nema_1 MNGRN16_nema_2 MNGRN16_nema_3 MNGRN16_nema_4 MNGRN16_nema_5	SRR9211641 SRR9211644 SRR9211643 SRR9211650 SRR9211649	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi