LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [G. max (transcript)]
  • Detail of Experiment mapped on Glycine max Wm82 Gm275Wm82a2V1

Details

NameTranscriptome Profile of Near-Isogenic Soybean Lines for Beta-Conglycinin Alpha-Subunit Deficiency during Seed Maturation
DescriptionTo identify Alpha-null-related transcriptional changes, the gene expressions of cgy-2-NIL and its recurrent parent DN47 were compared using Illumina high-throughput RNA-sequencing on samples at 25, 35, 50, and 55 days after flowering (DAF). Seeds at 18 DAF served as the control. Overall design: Compare gene quantity and expression between the cgy-2-NIL and DN47 in five stages of soybean seeds collected at 18, 25, 35, 50, and 55 day after flowering
ContactKey Laboratory of Soybean Biology in Chinese Ministry of Education, College of Agriculture, Northeast Agricultural University
XrefPRJNA315512
Reference
Conditions10
SpeciesGlycine max
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Analysis

Mapped Genomes Gm275Wm82a2V1     Gm508Wm82a4V1    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
aSubunit18DAF Dongnong47 (DN47) cgy-2-NIL (near-isogenic line for alpha-subunit null) developing seed a-subunit-null_18 DAF_seeds
  • aSubunit18DAF_1
  • aSubunit18DAF_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
aSubunit25DAF Dongnong47 (DN47) cgy-2-NIL (near-isogenic line for alpha-subunit null) developing seed a-subunit-null_25 DAF_seeds
  • aSubunit25DAF_1
  • aSubunit25DAF_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
aSubunit35DAF Dongnong47 (DN47) cgy-2-NIL (near-isogenic line for alpha-subunit null) developing seed a-subunit-null_35 DAF_seeds
  • aSubunit35DAF_1
  • aSubunit35DAF_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
aSubunit50DAF Dongnong47 (DN47) cgy-2-NIL (near-isogenic line for alpha-subunit null) developing seed a-subunit-null_50 DAF_seeds
  • aSubunit50DAF_1
  • aSubunit50DAF_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
aSubunit55DAF Dongnong47 (DN47) cgy-2-NIL (near-isogenic line for alpha-subunit null) developing seed a-subunit-null_55 DAF_seeds
  • aSubunit55DAF_1
  • aSubunit55DAF_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
normal18DAF Dongnong47 (DN47) parental DN47; normal developing seed normal_18 DAF_seeds
  • normal18DAF_1
  • normal18DAF_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
normal25DAF Dongnong47 (DN47) parental DN47; normal developing seed normal_25 DAF_seeds
  • normal25DAF_1
  • normal25DAF_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
normal35DAF Dongnong47 (DN47) parental DN47; normal developing seed normal_35 DAF_seeds
  • normal35DAF_1
  • normal35DAF_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
normal50DAF Dongnong47 (DN47) parental DN47; normal developing seed normal_50 DAF_seeds
  • normal50DAF_1
  • normal50DAF_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
normal55DAF Dongnong47 (DN47) parental DN47; normal developing seed normal_55 DAF_seeds
  • normal55DAF_1
  • normal55DAF_2
 .bam    .bai    .csi   
.bam    .bai    .csi