LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

[G. max (gene)]
Detail of Experiment mapped on Glycine max Wm82 Gm275Wm82a2V1

Details

Name	Large-scale analysis of soybean embryonic axis in five time points during germination
Description	Purpose: This RNA-Seq study aims on elucidate the major trends in the transcriptional profile of soybean embryonic axes during germination. Methods: Soybean seeds were germinated in soaked cotton at 28ºC. In addition to dry seeds, seeds were harvested at 3, 6, 12, 24 hours after imbibition. Then the embryonic axes were separated from the cotyledons for RNA extraction. For each biological sample, 20 seeds were used. Results: Identification of genes and pathways involved in metabolism, hormone signaling and transcriptional regulation. Overall design: Large-scale analysis of soybean embryonic axis in five time points during germination: dry, 3, 6, 12 and 24 hours after imbibition.
Contact	LQFPP, CBB, Universidade Estadual do Norte Fluminense Darcy Ribeiro
Xref	PRJNA326110
Reference	Bellieny-Rabelo D et al . 2016;
Conditions	5
Species	Glycine max
Metadata export	.CSV .JSON

Analysis

Mapped Genomes	Gm275Wm82a2V1 Gm508Wm82a4V1
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Conditions

Name	Genotype	Mutation	Stage	Tissue	Treatment	Level	Time	Samples	Xref	Download alignments
DryEmbryonicAxis	BRS 284			embryonic axis	Dry embryonic axis		0 hours	DryEmbryonicAxis_1 DryEmbryonicAxis_2 DryEmbryonicAxis_3 DryEmbryonicAxis_4 DryEmbryonicAxis_5 DryEmbryonicAxis_6 DryEmbryonicAxis_7 DryEmbryonicAxis_8 DryEmbryonicAxis_9 DryEmbryonicAxis_10	SRR3680368 SRR3680369 SRR3680370 SRR3680371 SRR3680372 SRR3680373 SRR3680374 SRR3680375 SRR3680376 SRR3680377	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
embryonicAxis_12h_afterImbibition	BRS 284			embryonic axis	Embryonic axis 12 hours after imbibition		12 hours	embryonicAxis_12h_afterImbibition_1 embryonicAxis_12h_afterImbibition_2 embryonicAxis_12h_afterImbibition_3 embryonicAxis_12h_afterImbibition_4 embryonicAxis_12h_afterImbibition_5 embryonicAxis_12h_afterImbibition_6 embryonicAxis_12h_afterImbibition_7 embryonicAxis_12h_afterImbibition_8 embryonicAxis_12h_afterImbibition_9 embryonicAxis_12h_afterImbibition_10	SRR3680398 SRR3680399 SRR3680400 SRR3680401 SRR3680402 SRR3680403 SRR3680404 SRR3680405 SRR3680406 SRR3680407	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
embryonicAxis_24h_afterImbibition	BRS 284			embryonic axis	Embryonic axis 24 hours after imbibition		24 hours	embryonicAxis_24h_afterImbibition_1 embryonicAxis_24h_afterImbibition_2 embryonicAxis_24h_afterImbibition_3 embryonicAxis_24h_afterImbibition_4 embryonicAxis_24h_afterImbibition_5 embryonicAxis_24h_afterImbibition_6 embryonicAxis_24h_afterImbibition_7 embryonicAxis_24h_afterImbibition_8 embryonicAxis_24h_afterImbibition_9 embryonicAxis_24h_afterImbibition_10	SRR3680408 SRR3680409 SRR3680410 SRR3680411 SRR3680412 SRR3680413 SRR3680414 SRR3680415 SRR3680416 SRR3680417	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
embryonicAxis_3h_afterImbibition	BRS 284			embryonic axis	Embryonic axis 3 hours after imbibition		3 hours	embryonicAxis_3h_afterImbibition_1 embryonicAxis_3h_afterImbibition_2 embryonicAxis_3h_afterImbibition_3 embryonicAxis_3h_afterImbibition_4 embryonicAxis_3h_afterImbibition_5 embryonicAxis_3h_afterImbibition_6 embryonicAxis_3h_afterImbibition_7 embryonicAxis_3h_afterImbibition_8 embryonicAxis_3h_afterImbibition_9 embryonicAxis_3h_afterImbibition_10	SRR3680378 SRR3680379 SRR3680380 SRR3680381 SRR3680382 SRR3680383 SRR3680384 SRR3680385 SRR3680386 SRR3680387	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi
embryonicAxis_6h_afterImbibition	BRS 284			embryonic axis	Embryonic axis 6 hours after imbibition		6 hours	embryonicAxis_6h_afterImbibition_1 embryonicAxis_6h_afterImbibition_2 embryonicAxis_6h_afterImbibition_3 embryonicAxis_6h_afterImbibition_4 embryonicAxis_6h_afterImbibition_5 embryonicAxis_6h_afterImbibition_6 embryonicAxis_6h_afterImbibition_7 embryonicAxis_6h_afterImbibition_8 embryonicAxis_6h_afterImbibition_9 embryonicAxis_6h_afterImbibition_10	SRR3680388 SRR3680389 SRR3680390 SRR3680391 SRR3680392 SRR3680393 SRR3680394 SRR3680395 SRR3680396 SRR3680397	.bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi .bam .bai .csi