LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [G. max (gene)]
  • Detail of Experiment mapped on Glycine max Wm82 Gm275Wm82a2V1

Details

NameGene Expression Changes during embryo and seed maturation, quiescence and germination in soybean
DescriptionTo understand the molecular events underlying seed maturation, quiescence and germination, we performed transcriptome analysis of soybean (Glycine max) embryos at four seed developmental stages (cotyledon, early, mid and late maturation), mature dry seeds, and seedlings, eight days after seed sowing. Overall design: mRNA profiling was performed on embryos at 4 stages of development, dry seeds and seedlings. Three biological replicates were collected for each developmental stage.
ContactHarada lab, Plant Biology, University of California
XrefPRJNA388955
Reference
Conditions6
SpeciesGlycine max
Metadata export .CSV   .JSON

Analysis

Mapped Genomes Gm275Wm82a2V1     Gm508Wm82a4V1    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
Cotyledon-stage_Embryo Williams 82 cotyledon embryo
  • Cotyledon-stage_Embryo_1
  • Cotyledon-stage_Embryo_2
  • Cotyledon-stage_Embryo_3
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Dry_Seed Williams 82 mature, dry seed seed
  • Dry_Seed_1
  • Dry_Seed_2
  • Dry_Seed_3
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Early_Maturation-stage_Embryo Williams 82 early maturation embryo
  • Early_Maturation-stage_Embryo_1
  • Early_Maturation-stage_Embryo_2
  • Early_Maturation-stage_Embryo_3
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Seedling_8DAI Williams 82 8 day after seed sowing seedling
  • Seedling_8DAI_1
  • Seedling_8DAI_2
  • Seedling_8DAI_3
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Late_Maturation-stage_Embryo Williams 82 late maturation embryo
  • Late_Maturation-stage_Embryo_1
  • Late_Maturation-stage_Embryo_2
  • Late_Maturation-stage_Embryo_3
 .bam    .bai    .csi   
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Mid_Maturation-stage_Embryo Williams 82 mid-maturation embryo
  • Mid_Maturation-stage_Embryo_1
  • Mid_Maturation-stage_Embryo_2
  • Mid_Maturation-stage_Embryo_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi