LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [G. max (gene)]
  • Detail of Experiment mapped on Glycine max Wm82 Gm508Wm82a4V1

Details

NameGlycine max Gene expression Analysis of Iron Stress Response
DescriptionRNAseq was used to compare gene expression in soybean grown in iron sufficient and deficient conditions, one and six hours after transfer into iron stress conditions
ContactUSDA-ARS
XrefPRJNA223414
Reference
Conditions8
SpeciesGlycine max
Metadata export .CSV   .JSON

Analysis

Mapped Genomes Gm275Wm82a2V1     Gm508Wm82a4V1    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
1CLD Clark 16 days leaves deficient Fe 1 hour
  • 1CLD_1
  • 1CLD_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
1CLS Clark 16 days leaves sufficient Fe 1 hour
  • 1CLS_1
  • 1CLS_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
1CRD Clark 16 days root deficient Fe 1 hour
  • 1CRD_1
  • 1CRD_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
1CRS Clark 16 days root sufficient Fe 1 hour
  • 1CRS_1
  • 1CRS_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
6CLD Clark 16 days leaves deficient Fe 6 hours
  • 6CLD_1
  • 6CLD_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
6CLS Clark 16 days leaves sufficient Fe 6 hours
  • 6CLS_1
  • 6CLS_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
6CRD Clark 16 days root deficient Fe 6 hours
  • 6CRD_1
  • 6CRD_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
6CRS Clark 16 days root sufficient Fe 6 hours
  • 6CRS_1
  • 6CRS_2
 .bam    .bai    .csi   
.bam    .bai    .csi