LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [A. thaliana (transcript)]
  • Detail of Experiment mapped on Arabidopsis thaliana col Araport11

Details

NameCombining chemical and genetic approaches to increase drought resistance in plants
DescriptionUsing RNA-Seq to analyse the gene expression pattern induced by ABA and two artificial analogs in wild type (Col-0) Arabidopsis plants Overall design: RNA-Seq: 3-week-old Col-0 plants, sprayed with DMSO (control) or 10μM ABA/AMF1beta/AMF4 and sampled 6,24 or 72hours after treatment.
ContactShanghai Center for Plant Stress Biology, Chinese Academy of Sciences
XrefPRJNA394661
Reference
Conditions12
SpeciesArabidopsis thaliana
Metadata export .CSV   .JSON

Analysis

Mapped Genomes Araport11    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
ABA_1d Col-0 3-week-old leaf ABA 10μM 1d
  • ABA_1d_1
  • ABA_1d_2
  • ABA_1d_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
ABA_3d Col-0 3-week-old leaf ABA 10μM 3d
  • ABA_3d_1
 .bam    .bai    .csi   
ABA_6h Col-0 3-week-old leaf ABA 10μM 6h
  • ABA_6h_1
  • ABA_6h_2
  • ABA_6h_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
AMF1_1d Col-0 3-week-old leaf AMF1 10μM 1d
  • AMF1_1d_1
  • AMF1_1d_2
  • AMF1_1d_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
AMF1_3d Col-0 3-week-old leaf AMF1 10μM 3d
  • AMF1_3d_1
  • AMF1_3d_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
AMF1_6h Col-0 3-week-old leaf AMF1 10μM 6h
  • AMF1_6h_1
  • AMF1_6h_2
  • AMF1_6h_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
AMF4_1d Col-0 3-week-old leaf AMF4 10μM 1d
  • AMF4_1d_1
  • AMF4_1d_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
AMF4_3d Col-0 3-week-old leaf AMF4 10μM 3d
  • AMF4_3d_1
  • AMF4_3d_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
AMF4_6h Col-0 3-week-old leaf AMF4 10μM 6h
  • AMF4_6h_1
  • AMF4_6h_2
  • AMF4_6h_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
DMSO_1d Col-0 3-week-old leaf DMSO control 1d
  • DMSO_1d_1
  • DMSO_1d_2
  • DMSO_1d_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi   
DMSO_3d Col-0 3-week-old leaf DMSO control 3d
  • DMSO_3d_1
 .bam    .bai    .csi   
DMSO_6h Col-0 3-week-old leaf DMSO control 6h
  • DMSO_6h_1
  • DMSO_6h_2
  • DMSO_6h_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi