LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

Name	Gene expression profiling of the octuple jazQ mycT mutant
Description	The quintuple jaz mutant jazQ and the triple myc mutant mycT affect plant defense and growth. We used RNA-sequencing to query the transcriptomes of jazQ and mycT, as well as the combined jazQ mycT octuple mutatant, and examined how these mutations alter the expression of genes mis-regulated in jazQ. The data highlight how jasmonate signaling pathways are largely governed by MYC transcription factors, but also highlight some MYC-independent expression patterns. Overall design: Analysis of Col-0 (wildtype), jazQ, mycT, and jazQ mycT (four genotypes), with three biological replicates per genotype - 12 total samples. This series contains the re-use of 6 samples from GSE79012 (Col-0 and jazQ).
Contact	Plant Research Laboratory, Michigan State University
Xref	PRJNA384979
Reference	Major IT et al . 2017;
Conditions	4
Species	Arabidopsis thaliana
Metadata export	.CSV .JSON

Mapped Genomes	Araport11
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Name	Genotype	Mutation	Stage	Tissue	Samples	Xref	Download alignments
JazQ	Col-0	jazQ	8 d	whole plant	JazQ_1 JazQ_2 JazQ_3	SRR5488802 SRR5488803 SRR5488804	.bam .bai .csi .bam .bai .csi .bam .bai .csi
jazQ_mycT	Col-0	jazQ mycT	8 d	whole plant	jazQ_mycT_1 jazQ_mycT_2 jazQ_mycT_3	SRR5488808 SRR5488809 SRR5488810	.bam .bai .csi .bam .bai .csi .bam .bai .csi
MycT	Col-0	mycT	8 d	whole plant	MycT_1 MycT_2 MycT_3	SRR5488805 SRR5488806 SRR5488807	.bam .bai .csi .bam .bai .csi .bam .bai .csi
WT	Col-0	wildtype	8 d	whole plant	WT_1 WT_2 WT_3	SRR5488799 SRR5488800 SRR5488801	.bam .bai .csi .bam .bai .csi .bam .bai .csi