LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [A. thaliana (gene)]
  • Detail of Experiment mapped on Arabidopsis thaliana col Araport11

Details

NameDNA replication-coupled histone modification maintains Polycomb gene silencing in plants
DescriptionPropagation of patterns of gene expression through the cell cycle requires prompt restoration of epigenetic marks after the twofold dilution caused by DNA replication. Here, we show that the transcriptional repressive mark histone H3K27 trimethylation (H3K27me3) is restored in replicating plant cells through DNA replication-coupled modification of histone variant H3.1. Plants evolved a mechanism for efficient K27 trimethylation on H3.1, which is essential for inheritance of the silencing memory from mother to daughter cells. We illustrate how this mechanism establishes H3K27me3 mediated silencing during the developmental transition to flowering. Our study reveals transmission of H3K27me3 in plant cells through cell divisions, enabling H3K27me3 to function as an epigenetic mark. Overall design: Comparison of gene expression between Col and h3.1kd lines.
ContactGregor Mendel Institute
XrefPRJNA393891
Reference
Conditions3
SpeciesArabidopsis thaliana
Metadata export .CSV   .JSON

Analysis

Mapped Genomes Araport11    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
h3.1kd-1 h3.1kd-1 Seedlings
  • h3.1kd-1_1
  • h3.1kd-1_2
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h3.1kd-2 h3.1kd-2 Seedlings
  • h3.1kd-2_1
  • h3.1kd-2_2
.bam    .bai    .csi   
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Wt wildtype Seedlings
  • Wt_1
  • Wt_2
.bam    .bai    .csi   
.bam    .bai    .csi