LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [A. thaliana (gene)]
  • Detail of Experiment mapped on Arabidopsis thaliana col Araport11
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Details

NameRNAseq data for Arabidopsis TF mutants during germination
DescriptionRNAseq profiling of eight transcription factor mutants during germination in Arabidopsis, at 24 h in the light (after 48h of stratification). Overall design: Total RNA was extracted from 50-100 mg Arabidopsis seeds in duplicates.
ContactBaulcombe lab, Department of Plant Sciences, University of Cambridge
XrefPRJNA388407
Reference
Conditions9
SpeciesArabidopsis thaliana
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Analysis

Mapped Genomes Araport11    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
Athb15 Col-0 athb15 24 h in the light (after 48h of stratification) germinating seed germinating seed_athb15 24 hSL
  • Athb15_1
  • Athb15_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Athb25 Col-0 athb25 24 h in the light (after 48h of stratification) germinating seed germinating seed_athb25 24 hSL
  • Athb25_1
  • Athb25_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Hat2 Col-0 hat2 24 h in the light (after 48h of stratification) germinating seed germinating seed_hat2 24 hSL
  • Hat2_1
  • Hat2_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Lmi1 Col-0 lmi1 24 h in the light (after 48h of stratification) germinating seed germinating seed_lmi1 24 hSL
  • Lmi1_1
  • Lmi1_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Obp1 Col-0 obp1 24 h in the light (after 48h of stratification) germinating seed germinating seed_obp1 24 hSL
  • Obp1_1
  • Obp1_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Smb Col-0 smb 24 h in the light (after 48h of stratification) germinating seed germinating seed_smb 24 hSL
  • Smb_1
  • Smb_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Vnd2 Col-0 vnd2 24 h in the light (after 48h of stratification) germinating seed germinating seed_vnd2 24 hSL
  • Vnd2_1
  • Vnd2_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Wrky14 Col-0 wrky14 24 h in the light (after 48h of stratification) germinating seed germinating seed_wrky14 24 hSL
  • Wrky14_1
  • Wrky14_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
WT Col-0 WT(Col0) 24 h in the light (after 48h of stratification) germinating seed germinating seed_Col-0 (wt) 24 hSL
  • WT_1
  • WT_2
 .bam    .bai    .csi   
.bam    .bai    .csi