LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [A. thaliana (gene)]
  • Detail of Experiment mapped on Arabidopsis thaliana col Araport11

Details

NameRNAseq data for Arabidopsis TF mutants during germination
DescriptionRNAseq profiling of eight transcription factor mutants during germination in Arabidopsis, at 24 h in the light (after 48h of stratification). Overall design: Total RNA was extracted from 50-100 mg Arabidopsis seeds in duplicates.
ContactBaulcombe lab, Department of Plant Sciences, University of Cambridge
XrefPRJNA388407
Reference
Conditions9
SpeciesArabidopsis thaliana
Metadata export .CSV   .JSON

Analysis

Mapped Genomes Araport11    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
Athb15 Col-0 athb15 24 h in the light (after 48h of stratification) germinating seed germinating seed_athb15 24 hSL
  • Athb15_1
  • Athb15_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Athb25 Col-0 athb25 24 h in the light (after 48h of stratification) germinating seed germinating seed_athb25 24 hSL
  • Athb25_1
  • Athb25_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Hat2 Col-0 hat2 24 h in the light (after 48h of stratification) germinating seed germinating seed_hat2 24 hSL
  • Hat2_1
  • Hat2_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Lmi1 Col-0 lmi1 24 h in the light (after 48h of stratification) germinating seed germinating seed_lmi1 24 hSL
  • Lmi1_1
  • Lmi1_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Obp1 Col-0 obp1 24 h in the light (after 48h of stratification) germinating seed germinating seed_obp1 24 hSL
  • Obp1_1
  • Obp1_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Smb Col-0 smb 24 h in the light (after 48h of stratification) germinating seed germinating seed_smb 24 hSL
  • Smb_1
  • Smb_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Vnd2 Col-0 vnd2 24 h in the light (after 48h of stratification) germinating seed germinating seed_vnd2 24 hSL
  • Vnd2_1
  • Vnd2_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
Wrky14 Col-0 wrky14 24 h in the light (after 48h of stratification) germinating seed germinating seed_wrky14 24 hSL
  • Wrky14_1
  • Wrky14_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
WT Col-0 WT(Col0) 24 h in the light (after 48h of stratification) germinating seed germinating seed_Col-0 (wt) 24 hSL
  • WT_1
  • WT_2
 .bam    .bai    .csi   
.bam    .bai    .csi