LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [A. thaliana (transcript)]
  • Detail of Experiment mapped on Arabidopsis thaliana col Araport11

Details

NameCoevolution of hormone metabolism and signaling networks expands plant adaptive plasticity
DescriptionDifferential transcriptomic analysis of 10-day-old Arabidopsis seedlings treated with 50 μM ABA, PA, or DPA. Overall design: 10-day-old Arabidopsis seedlings grown on MS medium was treated with 50 μM ABA, PA, or DPA. Total RNA was extracted from biological duplicates, Illumina RNAseq was performed on each sample.
ContactWhitehead Institute for Biomedical Research
XrefPRJNA274888
Reference
Conditions4
SpeciesArabidopsis thaliana
Metadata export .CSV   .JSON

Analysis

Mapped Genomes Araport11    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
WT_ABA Columbia 10-day-old whole seedlings 50µM ABA for 3h
  • WT_ABA_1
  • WT_ABA_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
WT_DPA Columbia 10-day-old whole seedlings 50µM DPA for 3h
  • WT_DPA_1
  • WT_DPA_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
WT_mock Columbia 10-day-old whole seedlings none (mock control)
  • WT_mock_1
  • WT_mock_2
 .bam    .bai    .csi   
.bam    .bai    .csi   
WT_PA Columbia 10-day-old whole seedlings 50µM PA for 3h
  • WT_PA_1
  • WT_PA_2
 .bam    .bai    .csi   
.bam    .bai    .csi