LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

Name	Endoreduplication-mediated initiation of symbiotic organ development in Lotus japonicus
Description	We performed RNA-seq analysis during symbiotic interaction between Lotus japonicus and Mesorhizobium loti using Hiseq2000. In order to identify L. japonicus and M. loti genes involved in the early stage of legume-rhizobium symbiosis, we constructed respective cDNA libraries from infected whorl roots of wild-type L. japonicus plants (MG-20) and vagrant infection thread 1 (vag1) mutants (Suzaki et al. Development, 2014)
Contact	National Institute for Basic Biology
Xref	PRJDB3089
Reference	Suzaki T et al . 2014;
Conditions	4
Species	Lotus japonicus
Metadata export	.CSV .JSON

Mapped Genomes	LjMG20V3
Expression Analysis	Expression Profile / Differential Expression / Co-expression

Name	Genotype	Tissue	Treatment	Samples	Xref	Download alignments
MG-20_inoculated	MG-20	root nodules	inoculated	MG-20_inoculated_1 MG-20_inoculated_2 MG-20_inoculated_3	DRR022397 DRR022398 DRR022399	.bam .bai .csi .bam .bai .csi .bam .bai .csi
MG-20_non-inoculated	MG-19	root nodules	Non-inoculated	MG-20_non-inoculated_1 MG-20_non-inoculated_2 MG-20_non-inoculated_3	DRR022400 DRR022401 DRR022402	.bam .bai .csi .bam .bai .csi .bam .bai .csi
vag1_inoculated	vag1	root nodules	inoculated	vag1_inoculated_1 vag1_inoculated_2 vag1_inoculated_3	DRR022403 DRR022404 DRR022405	.bam .bai .csi .bam .bai .csi .bam .bai .csi
vag1_non-inoculated	vag1	root nodules	Non-inoculated	vag1_non-inoculated_1 vag1_non-inoculated_2 vag1_non-inoculated_3	DRR022406 DRR022407 DRR022408	.bam .bai .csi .bam .bai .csi .bam .bai .csi