LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

  • [L. japonicus (transcript)]
  • Detail of Experiment mapped on Lotus japonicus MG20 LjMG20V3

Details

NameLotus japonicus raw sequence reads of root and shoot samples
DescriptionRaw sequence reads of water- or Mesorhizobium loti-treated Lotus japonicus ecotype Gifu B129, separated into root and shoot tissues. The project aims to dissect differential gene expression and RNA species enrichment among L. japonicus organs under various inoculation conditions.
Contact- Aarhus University- GATC Biotech
XrefPRJNA384655
Reference
Conditions4
SpeciesLotus japonicus
Metadata export .CSV   .JSON

Analysis

Mapped Genomes LjMG20V3    
Expression Analysis Expression Profile /  Differential Expression /  Co-expression

Conditions

Name Genotype Mutation Stage Tissue Treatment Level Time Samples Xref Download alignments
NG-8641_Groot_Mock Gifu B129 Seedling Root Mock
  • NG-8641_Groot_Mock_1
  • NG-8641_Groot_Mock_2
  • NG-8641_Groot_Mock_3
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NG-8641_Groot_R7A Gifu B129 Seedling Root Mesorhizobium loti R7A
  • NG-8641_Groot_R7A_1
  • NG-8641_Groot_R7A_2
  • NG-8641_Groot_R7A_3
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NG-8641_Gshoot_Mock Gifu B129 Seedling Shoot Mock
  • NG-8641_Gshoot_Mock_1
  • NG-8641_Gshoot_Mock_2
  • NG-8641_Gshoot_Mock_3
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NG-8641_Gshoot_R7A Gifu B129 Seedling Shoot Mesorhizobium loti R7A
  • NG-8641_Gshoot_R7A_1
  • NG-8641_Gshoot_R7A_2
  • NG-8641_Gshoot_R7A_3
 .bam    .bai    .csi   
.bam    .bai    .csi   
.bam    .bai    .csi