| Name | identify L. japonicus genes involved in inhibition of nodulation in shoots |
|---|---|
| Description | We performed RNA-seq analysis of shoot samples during symbiotic interaction between Lotus japonicus and Mesorhizobium loti. In order to identify L. japonicus genes involved in inhibition of nodulation in shoots, we constructed respective cDNA libraries from shoots of wild-type L. japonicus (MG-20), har1 mutants, CLE-RS1 constitutive expression lines and CLE-RS2 constitutive expression lines. |
| Contact | National Institute for Basic Biology "Genome Science" (Grant ID 221S0002, Ministry of Education, Culture, Sports, Science and Technology) |
| Xref | PRJDB3189 |
| Reference |
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| Conditions | 4 |
| Species | Lotus japonicus |
| Metadata export | .CSV .JSON |
| Mapped Genomes | LjMG20V3 |
|---|---|
| Expression Analysis | Expression Profile / Differential Expression / Co-expression |
| Name | Genotype | Mutation | Stage | Tissue | Treatment | Level | Time | Samples | Xref | Download alignments |
|---|---|---|---|---|---|---|---|---|---|---|
| CLE-RS1ox | CLE-RS1 constitutive expression lines | shoot | Total RNA was isolated from shoots of Lotus japonicus CLE-RS1 constitutive expression lines (3 days after infection with M. loti). |
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.bam
.bai
.csi
.bam .bai .csi .bam .bai .csi |
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| CLE-RS2ox | CLE-RS2 constitutive expression lines | shoot | Total RNA was isolated from shoots of Lotus japonicus CLE-RS2 constitutive expression lines (3 days after infection with M. loti). |
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.bam
.bai
.csi
.bam .bai .csi .bam .bai .csi |
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| Har1 | har1 | shoot | Total RNA was isolated from shoots of Lotus japonicus har1 mutants (3 days after infection with M. loti). |
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.bam
.bai
.csi
.bam .bai .csi .bam .bai .csi |
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| MG-20 | MG-20 | shoot | Total RNA was isolated from shoots of Lotus japonicus wild type (3 days after infection with M. loti). |
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.bam
.bai
.csi
.bam .bai .csi .bam .bai .csi |