LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
T295H_Sterile_Control2 Transcriptional profiling ...... Line T295H 35 days after planting leaf Control 3
T295H_Sterile_Control3 Transcriptional profiling ...... Line T295H 63 days after planting leaf Control 3
T295H_Sterile2 Transcriptional profiling ...... Line T295H 35 days after planting leaf Sterile 3
T295H_Sterile3 Transcriptional profiling ...... Line T295H 63 days after planting leaf Sterile 3
T295H_SterileAP1 Transcriptional profiling ...... Line T295H 28 Days after planting (R2 growth stage) leaf Initial timepoint 3
Williams82_AP1 Transcriptional profiling ...... Line Williams 82 38 days after planting (R2 growth stage) leaf Initial timepoint 3
Williams82_Depodding_Control2 Transcriptional profiling ...... Line Williams 82 45 days after planting leaf Control 3
Williams82_Depodding_Control3 Transcriptional profiling ...... Line Williams 82 54 days after planting leaf Control 3
Williams82_Depodding_Control4 Transcriptional profiling ...... Line Williams 82 64 days after planting leaf Control 3
Williams82_Depodding_Control5 Transcriptional profiling ...... Line Williams 82 76 days after planting leaf Control 3
Williams82_Depodding2 Transcriptional profiling ...... Line Williams 82 45 days after planting leaf Depodded 3
Williams82_Depodding3 Transcriptional profiling ...... Line Williams 82 54 days after planting leaf Depodded 3
Williams82_Depodding4 Transcriptional profiling ...... Line Williams 82 76 days after planting leaf Depodded 3
Williams82_Depodding5 Transcriptional profiling ...... Line Williams 82 64 days after planting leaf Depodded 3
TW-1_veryLowRate_12hSeedsImbibition Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate 12h after the seeds finished imbibition 3
TW-1_veryLowRate_emergingPrimaryRoot1mm Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate emerging primary root reached 1mm in length 3
TW-1_veryLowRate_imbibitionStage Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate imbibition stage 3
TW-1-M_higherRate_12hSeedsImbibition Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 12h after the seeds finished imbibition 3
TW-1-M_higherRate_emergingPrimaryRoot1mm Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 emerging primary root reached 1mm in length 3
TW-1-M_higherRate_imbibitionStage Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 imbibition stage 3
GmSIN1_OE_mock Transgenic and convention ...... GmSIN1 over-expression 2-week old root leaf mock treatment for 6 hrs 2
GmSIN1_OE_NaCl Transgenic and convention ...... GmSIN1 over-expression 2-week old root leaf 150 mM NaCl treatment for 6 hrs 2
WT_mock Transgenic and convention ...... GmSIN1 wildtype 2-week old root leaf mock treatment for 6 hrs 2
WT_NaCl Transgenic and convention ...... GmSIN1 wildtype 2-week old root leaf 150 mM NaCl treatment for 6 hrs 2
Control_2008 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Dual II Magnum (S-metolachlor) (1.9 L ha-1) on May 22 1
Control_2009 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Poast (sethoxydim) (1.8 L ha-1) on June 26 1
Control_2010 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Glyphosate was used at 1.2 L ha-1 2
Control_2011 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Roundup Weather Max (glyphosate)\, Dual II Magnum (s-metolachlor)\, Poast (sethoxydim)\, and Pursuit (imazethapyr) were used at suggested ra 2
Weedy_2008 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being a natural population of velvetleaf and buckwheat at denisties of about 300 m-2 1
Weedy_2009 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being a natural population of velvetleaf and buckwheat at denisties of about 48 m-2 1