LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
GmSIN1_OE_mock Transgenic and convention ...... GmSIN1 over-expression 2-week old root leaf mock treatment for 6 hrs 2
GmSIN1_OE_NaCl Transgenic and convention ...... GmSIN1 over-expression 2-week old root leaf 150 mM NaCl treatment for 6 hrs 2
WT_mock Transgenic and convention ...... GmSIN1 wildtype 2-week old root leaf mock treatment for 6 hrs 2
WT_NaCl Transgenic and convention ...... GmSIN1 wildtype 2-week old root leaf 150 mM NaCl treatment for 6 hrs 2
Control_2008 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Dual II Magnum (S-metolachlor) (1.9 L ha-1) on May 22 1
Control_2009 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Poast (sethoxydim) (1.8 L ha-1) on June 26 1
Control_2010 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Glyphosate was used at 1.2 L ha-1 2
Control_2011 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Roundup Weather Max (glyphosate)\, Dual II Magnum (s-metolachlor)\, Poast (sethoxydim)\, and Pursuit (imazethapyr) were used at suggested ra 2
Weedy_2008 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being a natural population of velvetleaf and buckwheat at denisties of about 300 m-2 1
Weedy_2009 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being a natural population of velvetleaf and buckwheat at denisties of about 48 m-2 1
Weedy_2010 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being flax at denisties of about 600 m-2 2
Weedy_2011 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being naturally occurring velvetleaf and weedy common sunflower (Helianthus annuus) at denisties of about 160 m-2 2
1CLD Glycine max Gene expressi ...... Clark 16 days leaves deficient Fe 1 hour 2
1CLS Glycine max Gene expressi ...... Clark 16 days leaves sufficient Fe 1 hour 2
1CRD Glycine max Gene expressi ...... Clark 16 days root deficient Fe 1 hour 2
1CRS Glycine max Gene expressi ...... Clark 16 days root sufficient Fe 1 hour 2
6CLD Glycine max Gene expressi ...... Clark 16 days leaves deficient Fe 6 hours 2
6CLS Glycine max Gene expressi ...... Clark 16 days leaves sufficient Fe 6 hours 2
6CRD Glycine max Gene expressi ...... Clark 16 days root deficient Fe 6 hours 2
6CRS Glycine max Gene expressi ...... Clark 16 days root sufficient Fe 6 hours 2
FH RNA-seq analysis reveals ...... Fiskeby III G. Max 5th trifiolate leaf leaf ozone exposure 75ppb 4
FL RNA-seq analysis reveals ...... Fiskeby III G. Max 5th trifiolate leaf leaf ozone exposure 25ppb 4
MH RNA-seq analysis reveals ...... Mandarin-Ottawa G. Max 5th trifiolate leaf leaf ozone exposure 75ppb 4
ML RNA-seq analysis reveals ...... Mandarin-Ottawa G. Max 5th trifiolate leaf leaf ozone exposure 25ppb 4
BJ_USDA122 RNA-seq analysis of dista ...... L76-1988 V1 stage Leaf Bradyrhizobium japonicum USDA122 3
control RNA-seq analysis of dista ...... L76-1988 V1 stage Leaf Mock treated with MgCl2 3
SF_USDA257 RNA-seq analysis of dista ...... L76-1988 V1 stage Leaf Sinorhizobium fredii USDA257 3