LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
GmSIN1_OE_mock Transgenic and convention ...... GmSIN1 over-expression 2-week old root leaf mock treatment for 6 hrs 2
GmSIN1_OE_NaCl Transgenic and convention ...... GmSIN1 over-expression 2-week old root leaf 150 mM NaCl treatment for 6 hrs 2
WT_mock Transgenic and convention ...... GmSIN1 wildtype 2-week old root leaf mock treatment for 6 hrs 2
WT_NaCl Transgenic and convention ...... GmSIN1 wildtype 2-week old root leaf 150 mM NaCl treatment for 6 hrs 2
Control_2008 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Dual II Magnum (S-metolachlor) (1.9 L ha-1) on May 22 1
Control_2009 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Poast (sethoxydim) (1.8 L ha-1) on June 26 1
Control_2010 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Glyphosate was used at 1.2 L ha-1 2
Control_2011 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Roundup Weather Max (glyphosate)\, Dual II Magnum (s-metolachlor)\, Poast (sethoxydim)\, and Pursuit (imazethapyr) were used at suggested ra 2
Weedy_2008 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being a natural population of velvetleaf and buckwheat at denisties of about 300 m-2 1
Weedy_2009 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being a natural population of velvetleaf and buckwheat at denisties of about 48 m-2 1
Weedy_2010 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being flax at denisties of about 600 m-2 2
Weedy_2011 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being naturally occurring velvetleaf and weedy common sunflower (Helianthus annuus) at denisties of about 160 m-2 2
1CLD Glycine max Gene expressi ...... Clark 16 days leaves deficient Fe 1 hour 2
1CLS Glycine max Gene expressi ...... Clark 16 days leaves sufficient Fe 1 hour 2
1CRD Glycine max Gene expressi ...... Clark 16 days root deficient Fe 1 hour 2
1CRS Glycine max Gene expressi ...... Clark 16 days root sufficient Fe 1 hour 2
6CLD Glycine max Gene expressi ...... Clark 16 days leaves deficient Fe 6 hours 2
6CLS Glycine max Gene expressi ...... Clark 16 days leaves sufficient Fe 6 hours 2
6CRD Glycine max Gene expressi ...... Clark 16 days root deficient Fe 6 hours 2
6CRS Glycine max Gene expressi ...... Clark 16 days root sufficient Fe 6 hours 2
10d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 10 days post initial seed size of 3-4 mm long embryo 3
15d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 15 days post initial seed size of 3-4 mm long embryo 3
20d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 20 days post initial seed size of 3-4 mm long embryo 3
25d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 25 days post initial seed size of 3-4 mm long embryo 3
30d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 30 days post initial seed size of 3-4 mm long embryo 3
35d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 35 days post initial seed size of 3-4 mm long embryo 3
40d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 40 days post initial seed size of 3-4 mm long embryo 3
45d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 45 days post initial seed size of 3-4 mm long embryo 3
55d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 55 days post initial seed size of 3-4 mm long embryo 3
5d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 5 days post initial seed size of 3-4 mm long embryo 3