LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
black_saddle Mutations in Argonaute5 I ...... immature seed coat 100-200 mg fresh seed weight 6
yellow_region Mutations in Argonaute5 I ...... immature seed coat 100-200 mg fresh seed weight 6
DryEmbryonicAxis Large-scale analysis of s ...... BRS 284 embryonic axis Dry embryonic axis 0 hours 10
embryonicAxis_12h_afterImbibition Large-scale analysis of s ...... BRS 284 embryonic axis Embryonic axis 12 hours after imbibition 12 hours 10
embryonicAxis_24h_afterImbibition Large-scale analysis of s ...... BRS 284 embryonic axis Embryonic axis 24 hours after imbibition 24 hours 10
embryonicAxis_3h_afterImbibition Large-scale analysis of s ...... BRS 284 embryonic axis Embryonic axis 3 hours after imbibition 3 hours 10
embryonicAxis_6h_afterImbibition Large-scale analysis of s ...... BRS 284 embryonic axis Embryonic axis 6 hours after imbibition 6 hours 10
TW-1_veryLowRate_12hSeedsImbibition Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate 12h after the seeds finished imbibition 3
TW-1_veryLowRate_emergingPrimaryRoot1mm Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate emerging primary root reached 1mm in length 3
TW-1_veryLowRate_imbibitionStage Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate imbibition stage 3
TW-1-M_higherRate_12hSeedsImbibition Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 12h after the seeds finished imbibition 3
TW-1-M_higherRate_emergingPrimaryRoot1mm Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 emerging primary root reached 1mm in length 3
TW-1-M_higherRate_imbibitionStage Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 imbibition stage 3
aSubunit18DAF Transcriptome Profile of ...... Dongnong47 (DN47) cgy-2-NIL (near-isogenic line for alpha-subunit null) developing seed a-subunit-null_18 DAF_seeds 2
aSubunit25DAF Transcriptome Profile of ...... Dongnong47 (DN47) cgy-2-NIL (near-isogenic line for alpha-subunit null) developing seed a-subunit-null_25 DAF_seeds 2
aSubunit35DAF Transcriptome Profile of ...... Dongnong47 (DN47) cgy-2-NIL (near-isogenic line for alpha-subunit null) developing seed a-subunit-null_35 DAF_seeds 2
aSubunit50DAF Transcriptome Profile of ...... Dongnong47 (DN47) cgy-2-NIL (near-isogenic line for alpha-subunit null) developing seed a-subunit-null_50 DAF_seeds 2
aSubunit55DAF Transcriptome Profile of ...... Dongnong47 (DN47) cgy-2-NIL (near-isogenic line for alpha-subunit null) developing seed a-subunit-null_55 DAF_seeds 2
normal18DAF Transcriptome Profile of ...... Dongnong47 (DN47) parental DN47; normal developing seed normal_18 DAF_seeds 2
normal25DAF Transcriptome Profile of ...... Dongnong47 (DN47) parental DN47; normal developing seed normal_25 DAF_seeds 2
normal35DAF Transcriptome Profile of ...... Dongnong47 (DN47) parental DN47; normal developing seed normal_35 DAF_seeds 2
normal50DAF Transcriptome Profile of ...... Dongnong47 (DN47) parental DN47; normal developing seed normal_50 DAF_seeds 2
normal55DAF Transcriptome Profile of ...... Dongnong47 (DN47) parental DN47; normal developing seed normal_55 DAF_seeds 2
10d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 10 days post initial seed size of 3-4 mm long embryo 3
15d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 15 days post initial seed size of 3-4 mm long embryo 3
20d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 20 days post initial seed size of 3-4 mm long embryo 3
25d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 25 days post initial seed size of 3-4 mm long embryo 3
30d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 30 days post initial seed size of 3-4 mm long embryo 3
35d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 35 days post initial seed size of 3-4 mm long embryo 3
40d_postInitialSeed Metabolic and Transcripti ...... wild type cultivar Williams 82 40 days post initial seed size of 3-4 mm long embryo 3