LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
TW-1_veryLowRate_12hSeedsImbibition Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate 12h after the seeds finished imbibition 3
TW-1_veryLowRate_emergingPrimaryRoot1mm Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate emerging primary root reached 1mm in length 3
TW-1_veryLowRate_imbibitionStage Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate imbibition stage 3
TW-1-M_higherRate_12hSeedsImbibition Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 12h after the seeds finished imbibition 3
TW-1-M_higherRate_emergingPrimaryRoot1mm Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 emerging primary root reached 1mm in length 3
TW-1-M_higherRate_imbibitionStage Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 imbibition stage 3
GmSIN1_OE_mock Transgenic and convention ...... GmSIN1 over-expression 2-week old root leaf mock treatment for 6 hrs 2
GmSIN1_OE_NaCl Transgenic and convention ...... GmSIN1 over-expression 2-week old root leaf 150 mM NaCl treatment for 6 hrs 2
WT_mock Transgenic and convention ...... GmSIN1 wildtype 2-week old root leaf mock treatment for 6 hrs 2
WT_NaCl Transgenic and convention ...... GmSIN1 wildtype 2-week old root leaf 150 mM NaCl treatment for 6 hrs 2
Control_2008 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Dual II Magnum (S-metolachlor) (1.9 L ha-1) on May 22 1
Control_2009 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Poast (sethoxydim) (1.8 L ha-1) on June 26 1
Control_2010 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Glyphosate was used at 1.2 L ha-1 2
Control_2011 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Control" with weeds controlled by application of Roundup Weather Max (glyphosate)\, Dual II Magnum (s-metolachlor)\, Poast (sethoxydim)\, and Pursuit (imazethapyr) were used at suggested ra 2
Weedy_2008 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being a natural population of velvetleaf and buckwheat at denisties of about 300 m-2 1
Weedy_2009 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being a natural population of velvetleaf and buckwheat at denisties of about 48 m-2 1
Weedy_2010 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being flax at denisties of about 600 m-2 2
Weedy_2011 Transcriptomics of weed s ...... AG1631 Newly emerged unfolded trifoliate less than 2 cm in length from at least 8 plants per plot "Weedy" with weeds being naturally occurring velvetleaf and weedy common sunflower (Helianthus annuus) at denisties of about 160 m-2 2
DN_G15 Transcriptomic comparison ...... DN pods at 15 day pod 1
DN_G5 Transcriptomic comparison ...... DN pods at 5 day pod 1
DN_H Transcriptomic comparison ...... DN flower flower 1
DN_JJ Transcriptomic comparison ...... DN apical bud apical bud 1
DN_WH Transcriptomic comparison ...... DN flower bud flower bud 1
HF_G15 Transcriptomic comparison ...... HF pods at 15 day pod 1
HF_G5 Transcriptomic comparison ...... HF pods at 5 day pod 1
HF_H Transcriptomic comparison ...... HF flower flower 1
HF_JJ Transcriptomic comparison ...... HF apical bud apical bud 1
HF_WH Transcriptomic comparison ...... HF flower bud flower bud 1
HN_G15 Transcriptomic comparison ...... HN pods at 15 day pod 1
HN_G5 Transcriptomic comparison ...... HN pods at 5 day pod 1