LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
Cotyledon-stage_Embryo Gene Expression Changes d ...... Williams 82 cotyledon embryo 3
Dry_Seed Gene Expression Changes d ...... Williams 82 mature, dry seed seed 3
Early_Maturation-stage_Embryo Gene Expression Changes d ...... Williams 82 early maturation embryo 3
Seedling_8DAI Gene Expression Changes d ...... Williams 82 8 day after seed sowing seedling 3
Late_Maturation-stage_Embryo Gene Expression Changes d ...... Williams 82 late maturation embryo 3
Mid_Maturation-stage_Embryo Gene Expression Changes d ...... Williams 82 mid-maturation embryo 3
DryEmbryonicAxis Large-scale analysis of s ...... BRS 284 embryonic axis Dry embryonic axis 0 hours 10
embryonicAxis_12h_afterImbibition Large-scale analysis of s ...... BRS 284 embryonic axis Embryonic axis 12 hours after imbibition 12 hours 10
embryonicAxis_24h_afterImbibition Large-scale analysis of s ...... BRS 284 embryonic axis Embryonic axis 24 hours after imbibition 24 hours 10
embryonicAxis_3h_afterImbibition Large-scale analysis of s ...... BRS 284 embryonic axis Embryonic axis 3 hours after imbibition 3 hours 10
embryonicAxis_6h_afterImbibition Large-scale analysis of s ...... BRS 284 embryonic axis Embryonic axis 6 hours after imbibition 6 hours 10
TW-1_veryLowRate_12hSeedsImbibition Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate 12h after the seeds finished imbibition 3
TW-1_veryLowRate_emergingPrimaryRoot1mm Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate emerging primary root reached 1mm in length 3
TW-1_veryLowRate_imbibitionStage Whole genome-wide transcr ...... low phytate soybean mutant TW-1 germination of soybean seed seed very low rate imbibition stage 3
TW-1-M_higherRate_12hSeedsImbibition Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 12h after the seeds finished imbibition 3
TW-1-M_higherRate_emergingPrimaryRoot1mm Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 emerging primary root reached 1mm in length 3
TW-1-M_higherRate_imbibitionStage Whole genome-wide transcr ...... low phytate soybean mutant TW-1-M germination of soybean seed seed significantly higher rate compared to TW-1 imbibition stage 3
Hutchesen_highVPD Genes Differentially Expr ...... Hutchesen fast wilting leaf high vapor pressure 2
Hutchesen_lowVPD Genes Differentially Expr ...... Hutchesen fast wilting leaf low vapor pressure 2
PI416937_highVPD Genes Differentially Expr ...... PI416937 slow wilting leaf high vapor pressure 2
PI416937_lowVPD Genes Differentially Expr ...... PI416937 slow wilting leaf low vapor pressure 2
PI471938_highVPD Genes Differentially Expr ...... PI471938 slow wilting leaf high vapor pressure 2
PI471938_lowVPD Genes Differentially Expr ...... PI471938 slow wilting leaf low vapor pressure 2
Control_R2 Distinct transcriptional ...... 93B15 R2 Flower Control 4
Control_R4 Distinct transcriptional ...... 93B15 R4 Pod Control 4
Ozone_R2 Distinct transcriptional ...... 93B15 R2 Flower Ozone 4
Ozone_R4 Distinct transcriptional ...... 93B15 R4 Pod Ozone 4
FH RNA-seq analysis reveals ...... Fiskeby III G. Max 5th trifiolate leaf leaf ozone exposure 75ppb 4
FL RNA-seq analysis reveals ...... Fiskeby III G. Max 5th trifiolate leaf leaf ozone exposure 25ppb 4
MH RNA-seq analysis reveals ...... Mandarin-Ottawa G. Max 5th trifiolate leaf leaf ozone exposure 75ppb 4