LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
A17_Mocktreated_2dpi important ethylene signal ...... A17 A17 (wild type) Seedling root Mock treated 2 days 3
A17_Mocktreated_7dpi important ethylene signal ...... A17 A17 (wild type) Seedling root Mock treated 7 days 3
A17_R.solani_inoculated_treated_2dpi important ethylene signal ...... A17 A17 (wild type) Seedling root R. solani inoculated treated 2 days 3
A17_R.solani_inoculated_treated_7dpi important ethylene signal ...... A17 A17 (wild type) Seedling root R. solani inoculated treated 7 days 3
sickle_Mocktreated_2dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root Mock treated 2 days 3
sickle_Mocktreated_7dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root Mock treated 7 days 3
sickle_R.solani_inoculated_treated_2dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root R. solani inoculated treated 2 days 3
sickle_R.solani_inoculated_treated_7dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root R. solani inoculated treated 7 days 3
M-R- effects of rhizobia and m ...... JA17 7 weeks roots no mycorrhizal fungi or rhizobia 8
M-R+ effects of rhizobia and m ...... JA17 7 weeks roots no mycorrhizal fungi but rhizobia present 8
M+R- effects of rhizobia and m ...... JA17 7 weeks roots mycorrhizal fungi present but no rhizobia 7
M+R+ effects of rhizobia and m ...... JA17 7 weeks roots mycorrhizal fungi and rhizobia present 8
A17_LCO_WT- CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 LCO WT002- 3h 3
A17_LCO_WT+ CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 LCO WT002+ 3h 3
A17_noLCO_WT- CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 noLCO WT003- 3h 3
A17_noLCO_WT+ CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 noLCO WT001+ 3h 3
Mtcre1_LCO_WT- CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 LCO WT003- 3h 3
Mtcre1_LCO_WT+ CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 LCO WT003+ 3h 3
Mtcre1_noLCO_WT- CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 noLCO WT001- 3h 3
Mtcre1_noLCO_WT+ CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 noLCO WT002+ 3h 3
Control Transcriptomic response t ...... wild type A17 5 days Root Hairs control 0h 2
NodFactor_20h Transcriptomic response t ...... wild type A17 5 days Root Hairs Nod Factor 20h 2
NodFactor_4h Transcriptomic response t ...... wild type A17 5 days Root Hairs Nod Factor 4h 2
BAP3hr Hormone treatment A17 3 days after germination root Cytokinin - 6-Benzylaminopurine;
Medicago seedlings Roots 		100 nM 6-Benzylaminopurine 3 hr 3
Control3hr Hormone treatment A17 3 days after germination root DMSO Control;
Medicago seedlings Roots 		DMSO Control 3 hr 3
IAA3hr Hormone treatment A17 3 days after germination root Auxin - Indole-3-acetic acid;
Medicago seedlings Roots 		1 uM Indole-3-acetic acid 3 hr 3
Mt4wkNod Nodule Development 1 A17 root nodule Inoculated with Rhizobia (sm1021) 28 days 3
MtNod0dpi Nodule Development 1 A17 6 days after germination root No Inoculation 3
MtNod10dpi Nodule Development 1 A17 16 days after germination root nodule Inoculated with Rhizobia (sm1021) 10 days 3
MtNod14dpi Nodule Development 1 A17 20 days after germination root nodule Inoculated with Rhizobia (sm1021) 14 days 3