LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

Choose conditions for co-expression analysis


  
  
Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
Rbm_Mock_24H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis mock-treated no Nod factor 24h 3
Rbm_Mock_4H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis mock-treated no Nod factor 4h 3
Rbm_NF_24H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis treated with symbiotic lipochitooligosaccharides (LCOs) 1E-08 M Nod factor 24h 2
Rbm_NF_4H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis treated with symbiotic lipochitooligosaccharides (LCOs) 1E-08 M Nod factor 4h 3
Mt4wkNod Nodule Development 1 A17 root nodule Inoculated with Rhizobia (sm1021) 28 days 3
MtNod0dpi Nodule Development 1 A17 6 days after germination root No Inoculation 3
MtNod10dpi Nodule Development 1 A17 16 days after germination root nodule Inoculated with Rhizobia (sm1021) 10 days 3
MtNod14dpi Nodule Development 1 A17 20 days after germination root nodule Inoculated with Rhizobia (sm1021) 14 days 3
MtNod14dpi_12h Nodule Development 1 A17 20 days after germination root nodule Inoculated with Rhizobia (sm1021);
Potassium nitrate supplemented
;
10 mM KNO3
14 days;
12 Hours
3
MtNod14dpi_48h Nodule Development 1 A17 28 days after germination root nodule Inoculated with Rhizobia (sm1021);
Potassium nitrate supplemented
;
10 mM KNO3
14 days;
48 Hours
3
MtNod4dpi Nodule Development 1 A17 10 days after germination root nodule Inoculated with Rhizobia (sm1021) 4 days 3
Mtbud Plant Organs A17 5 weeks after transplanting bud 3
Mtlargepod Plant Organs A17 Fully grown green and yellow pods containing seeds harvested at 8 - 10 weeks fruit 3
Mtleafblade Plant Organs A17 5 weeks after transplanting leaf 3
Mtmedpod Plant Organs A17 Medium-sized Pods containing seeds harvested at 8 - 10 weeks fruit 3
Mtopenflower Plant Organs A17 Fully opened flower at 6-7 weeks flower 3
Mtpetiole Plant Organs A17 5 weeks after transplanting petiole 3
Mtroot Plant Organs A17 5 weeks after transplanting root 3
Mtsmallpod Plant Organs A17 Pods containing seeds just forming at 8-10 weeks fruit 3
Mtstem Plant Organs A17 5 weeks after transplanting stalk 3
Myc_Ctrl Symbiotic Interactions 1 A17 Seedlings grown on plates root Mock treated 4 Hours 3
Myc_LCO_NSulf Symbiotic Interactions 1 A17 Seedlings grown on plates root Treated with non-sulfated Myc-LCO 4 Hours 3
Myc_LCO_Sulf Symbiotic Interactions 1 A17 Seedlings grown on plates root Treated with sulfated Myc-LCO 4 Hours 3
Cold_0h The U-box family genes in ...... Wild type Jemalong A17 4 weeks seedling Cold 0h 1
Cold_12h The U-box family genes in ...... Wild type Jemalong A17 4 weeks seedling Cold 12h 1
Cold_2h The U-box family genes in ...... Wild type Jemalong A17 4 weeks seedling Cold 2h 1
Cold_6h The U-box family genes in ...... Wild type Jemalong A17 4 weeks seedling Cold 6h 1
Drought_0h The U-box family genes in ...... Wild type Jemalong A17 4 weeks seedling Drought 0h 1
Drought_12h The U-box family genes in ...... Wild type Jemalong A17 4 weeks seedling Drought 12h 1
Drought_2h The U-box family genes in ...... Wild type Jemalong A17 4 weeks seedling Drought 2h 1