LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
A17_LCO_WT- CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 LCO WT002- 3h 3
A17_LCO_WT+ CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 LCO WT002+ 3h 3
A17_noLCO_WT- CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 noLCO WT003- 3h 3
A17_noLCO_WT+ CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 noLCO WT001+ 3h 3
Mtcre1_LCO_WT- CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 LCO WT003- 3h 3
Mtcre1_LCO_WT+ CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 LCO WT003+ 3h 3
Mtcre1_noLCO_WT- CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 noLCO WT001- 3h 3
Mtcre1_noLCO_WT+ CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 noLCO WT002+ 3h 3
A17_Mock_2dpi A17 and the ethylene inse ...... A17 root Mock 2dpi 3
A17_Mock_7dpi A17 and the ethylene inse ...... A17 root Mock 7dpi 3
A17_R.solani_inoculated_2dpi A17 and the ethylene inse ...... A17 root R.solani inoculated 2dpi 3
A17_R.solani_inoculated_7dpi A17 and the ethylene inse ...... A17 root R.solani inoculated 7dpi 3
skl_Mock_2dpi A17 and the ethylene inse ...... sickle mutant root Mock 2dpi 3
skl_Mock_7dpi A17 and the ethylene inse ...... sickle mutant root Mock 7dpi 3
skl_R.solani_inoculated_2dpi A17 and the ethylene inse ...... sickle mutant root R.solani inoculated 2dpi 3
skl_R.solani_inoculated_7dpi A17 and the ethylene inse ...... sickle mutant root R.solani inoculated 7dpi 3
Control transcriptome profiling o ...... R108 4th trifolate leaf of 3 week old plant leaf Infiltrated with 35S:MtCOla 4 days post infiltration 3
LAP1 transcriptome profiling o ...... R108 4th trifolate leaf of 3 week old plant leaf Infiltrated with 35S:MtLAP1 4 days post infiltration 3
Rbm_Mock_24H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis mock-treated no Nod factor 24h 3
Rbm_Mock_4H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis mock-treated no Nod factor 4h 3
Rbm_NF_24H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis treated with symbiotic lipochitooligosaccharides (LCOs) 1E-08 M Nod factor 24h 2
Rbm_NF_4H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis treated with symbiotic lipochitooligosaccharides (LCOs) 1E-08 M Nod factor 4h 3
Mtbud Plant Organs A17 5 weeks after transplanting bud 3
Mtlargepod Plant Organs A17 Fully grown green and yellow pods containing seeds harvested at 8 - 10 weeks fruit 3
Mtleafblade Plant Organs A17 5 weeks after transplanting leaf 3
Mtmedpod Plant Organs A17 Medium-sized Pods containing seeds harvested at 8 - 10 weeks fruit 3
Mtopenflower Plant Organs A17 Fully opened flower at 6-7 weeks flower 3
Mtpetiole Plant Organs A17 5 weeks after transplanting petiole 3
Mtroot Plant Organs A17 5 weeks after transplanting root 3
Mtsmallpod Plant Organs A17 Pods containing seeds just forming at 8-10 weeks fruit 3