LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
A17_Mocktreated_2dpi important ethylene signal ...... A17 A17 (wild type) Seedling root Mock treated 2 days 3
A17_Mocktreated_7dpi important ethylene signal ...... A17 A17 (wild type) Seedling root Mock treated 7 days 3
A17_R.solani_inoculated_treated_2dpi important ethylene signal ...... A17 A17 (wild type) Seedling root R. solani inoculated treated 2 days 3
A17_R.solani_inoculated_treated_7dpi important ethylene signal ...... A17 A17 (wild type) Seedling root R. solani inoculated treated 7 days 3
sickle_Mocktreated_2dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root Mock treated 2 days 3
sickle_Mocktreated_7dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root Mock treated 7 days 3
sickle_R.solani_inoculated_treated_2dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root R. solani inoculated treated 2 days 3
sickle_R.solani_inoculated_treated_7dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root R. solani inoculated treated 7 days 3
Control transcriptome profiling o ...... R108 4th trifolate leaf of 3 week old plant leaf Infiltrated with 35S:MtCOla 4 days post infiltration 3
LAP1 transcriptome profiling o ...... R108 4th trifolate leaf of 3 week old plant leaf Infiltrated with 35S:MtLAP1 4 days post infiltration 3
Rbm_Mock_24H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis mock-treated no Nod factor 24h 3
Rbm_Mock_4H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis mock-treated no Nod factor 4h 3
Rbm_NF_24H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis treated with symbiotic lipochitooligosaccharides (LCOs) 1E-08 M Nod factor 24h 2
Rbm_NF_4H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis treated with symbiotic lipochitooligosaccharides (LCOs) 1E-08 M Nod factor 4h 3
Mtbud Plant Organs A17 5 weeks after transplanting bud 3
Mtlargepod Plant Organs A17 Fully grown green and yellow pods containing seeds harvested at 8 - 10 weeks fruit 3
Mtleafblade Plant Organs A17 5 weeks after transplanting leaf 3
Mtmedpod Plant Organs A17 Medium-sized Pods containing seeds harvested at 8 - 10 weeks fruit 3
Mtopenflower Plant Organs A17 Fully opened flower at 6-7 weeks flower 3
Mtpetiole Plant Organs A17 5 weeks after transplanting petiole 3
Mtroot Plant Organs A17 5 weeks after transplanting root 3
Mtsmallpod Plant Organs A17 Pods containing seeds just forming at 8-10 weeks fruit 3
Mtstem Plant Organs A17 5 weeks after transplanting stalk 3
Salt_Root_No_HM198 Salt Stress HM198 25 days old root No Salt 3
Salt_Root_No_HM309 Salt Stress HM309 25 days old root No Salt 3
Salt_Root_Salt_HM198 Salt Stress HM198 25 days old root Salt - NaCl day 10 = 0.5% NaCl; day 15 = 1% NaCl; day 20 = 1.5% NaCl 3
Salt_Root_Salt_HM309 Salt Stress HM309 25 days old root Salt - NaCl day 10 = 0.5% NaCl; day 15 = 1% NaCl; day 20 = 1.5% NaCl 3
Salt_Shoot_No_HM198 Salt Stress HM198 25 days old shoot No Salt 3
Salt_Shoot_No_HM309 Salt Stress HM309 25 days old shoot No Salt 3
Salt_Shoot_Salt_HM198 Salt Stress HM198 25 days old shoot Salt - NaCl day 10 = 0.5% NaCl; day 15 = 1% NaCl; day 20 = 1.5% NaCl 3