LegumeIP V3
: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes
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[
M. truncatula
(transcript)]
Differential Expression
Experiment
Numerator condition
Denominator condition
Option
Submission
Result
Clean and Start Over
Choose numerator condition (treatment)
19 Rows Page 1/1
Name
Genotype
Mutation
Stage
Tissue/organ
Treatment
Level
Time
Replicate
M-R-
JA17
7 weeks
roots
no mycorrhizal fungi or rhizobia
8
M-R+
JA17
7 weeks
roots
no mycorrhizal fungi but rhizobia present
8
M+R-
JA17
7 weeks
roots
mycorrhizal fungi present but no rhizobia
7
M+R+
JA17
7 weeks
roots
mycorrhizal fungi and rhizobia present
8
CONTROL
Jemalong J5
CONTROL
21 days
Hairy root
3
TSAR1_OE
Jemalong J5
TSAR1 over expression
21 days
Hairy root
3
TSAR2_OE
Jemalong J5
TSAR2 over expression
21 days
Hairy root
3
Mt.nodule.T2
Jemalong A17
8-week-old
root nodule
Inoculated with S. meliloti;
drought for two (T2) days
2
Mt.nodule.T0
Jemalong A17
8-week-old
root nodule
Inoculated with S. meliloti;
well-watered control nodules (T0)
2
Mt.nodule.T4
Jemalong A17
8-week-old
root nodule
Inoculated with S. meliloti;
drought for four (T4) days
2
Mt.root.T0
Jemalong A17
8-week-old
root
Medicago truncatula non-inoculated roots;
well-watered control nodules (T0)
2
SUNN_Control_Root
A17
SUNN
18 days after planting
root
Whole root from un-colonized A17 sunn mutant
Sterile soil
At planting
3
SUNN_Control_Shoot
A17
SUNN
18 days after planting
shoot
Whole shoot from un-colonized A17 sunn mutant
Sterile soil
At planting
3
SUNN_Mycorrhiza_Root
A17
SUNN
18 days after planting
root
Whole root from mycorrhiza colonized A17 sunn mutant
10 % (w/w) soil inoculum
At planting
3
SUNN_Mycorrhiza_Shoot
A17
SUNN
18 days after planting
shoot
Whole shoot from mycorrhiza colonized A17 sunn mutant
10 % (w/w) soil inoculum
At planting
3
Wildtype_Control_Root
A17
None
18 days after planting
root
Whole root from un-colonized A17 wild type
Sterile soil
At planting
3
Wildtype_Control_Shoot
A17
None
18 days after planting
shoot
Whole shoot from un-colonized A17 wild type
Sterile soil
At planting
3
Wildtype_Mycorrhiza_Root
A17
None
18 days after planting
root
Whole root from mycorrhiza colonized A17 wild type
10 % (w/w) soil inoculum
At planting
3
Wildtype_Mycorrhiza_Shoot
A17
None
18 days after planting
shoot
Whole shoot from mycorrhiza colonized A17 wild type
10 % (w/w) soil inoculum
At planting
3