LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
A17_Mocktreated_2dpi important ethylene signal ...... A17 A17 (wild type) Seedling root Mock treated 2 days 3
A17_Mocktreated_7dpi important ethylene signal ...... A17 A17 (wild type) Seedling root Mock treated 7 days 3
A17_R.solani_inoculated_treated_2dpi important ethylene signal ...... A17 A17 (wild type) Seedling root R. solani inoculated treated 2 days 3
A17_R.solani_inoculated_treated_7dpi important ethylene signal ...... A17 A17 (wild type) Seedling root R. solani inoculated treated 7 days 3
sickle_Mocktreated_2dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root Mock treated 2 days 3
sickle_Mocktreated_7dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root Mock treated 7 days 3
sickle_R.solani_inoculated_treated_2dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root R. solani inoculated treated 2 days 3
sickle_R.solani_inoculated_treated_7dpi important ethylene signal ...... A17 sickle mutant (ethylene insensitive, point mutation in A17) Seedling root R. solani inoculated treated 7 days 3
A17_LCO_WT- CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 LCO WT002- 3h 3
A17_LCO_WT+ CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 LCO WT002+ 3h 3
A17_noLCO_WT- CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 noLCO WT003- 3h 3
A17_noLCO_WT+ CK dependent Rhizobium LC ...... A17 wild type genotype Susceptible zone E-MTAB-3007:A17 noLCO WT001+ 3h 3
Mtcre1_LCO_WT- CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 LCO WT003- 3h 3
Mtcre1_LCO_WT+ CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 LCO WT003+ 3h 3
Mtcre1_noLCO_WT- CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 noLCO WT001- 3h 3
Mtcre1_noLCO_WT+ CK dependent Rhizobium LC ...... A17 Mtcre1 mutant Susceptible zone E-MTAB-3007:Mtcre1 noLCO WT002+ 3h 3
line_2A Expression analysis of Mt ...... line 2A 3
Mt_ctrl Expression analysis of Mt ...... control 3
AM-K RNA-seq of mycorrhizal Me ...... Jemalong A17 root Rhizophagus irregularis;
AM-K 		3
AM+K RNA-seq of mycorrhizal Me ...... Jemalong A17 root Rhizophagus irregularis;
AM+K 		3
NM-K RNA-seq of mycorrhizal Me ...... Jemalong A17 root control;
NM-K 		4
NM+K RNA-seq of mycorrhizal Me ...... Jemalong A17 root control;
NM+K 		4
MtSm-RbmL-IZ Nodule Development 2 A17 22 days after germination + 15 days post inoculation root nodule ammonium nitrate supplemented;
Inoculation with the S. meliloti 2011 strain GMI11495 (4 days in N free prior to inoculation) 		10 m MNH4NO3 18 days;
22 days 		3
MtSm-RbmL-ZI Nodule Development 2 A17 22 days after germination + 15 days post inoculation root nodule ammonium nitrate supplemented;
Inoculation with the S. meliloti 2011 strain GMI11495 (4 days in N free prior to inoculation) 		10 m MNH4NO3 18 days;
22 days 		3
MtSm-RbmL-ZIId Nodule Development 2 A17 22 days after germination + 15 days post inoculation root nodule ammonium nitrate supplemented;
Inoculation with the S. meliloti 2011 strain GMI11495 (4 days in N free prior to inoculation) 		10 m MNH4NO3 18 days;
22 days 		3
MtSm-RbmL-ZIII Nodule Development 2 A17 22 days after germination + 15 days post inoculation root nodule ammonium nitrate supplemented;
Inoculation with the S. meliloti 2011 strain GMI11495 (4 days in N free prior to inoculation) 		10 m MNH4NO3 18 days;
22 days 		3
MtSm-RbmL-ZIIp Nodule Development 2 A17 22 days after germination + 15 days post inoculation root nodule ammonium nitrate supplemented;
Inoculation with the S. meliloti 2011 strain GMI11495 (4 days in N free prior to inoculation) 		10 m MNH4NO3 18 days;
22 days 		3
Cold_0h The U-box family genes in ...... Wild type Jemalong A17 4 weeks seedling Cold 0h 1
Cold_12h The U-box family genes in ...... Wild type Jemalong A17 4 weeks seedling Cold 12h 1
Cold_2h The U-box family genes in ...... Wild type Jemalong A17 4 weeks seedling Cold 2h 1