LegumeIP V3: From Models to Crops - An Integrative Gene Discovery Platform for Translational Genomics in Legumes

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Name Experiment Genotype Mutation Stage Tissue/organ Treatment Level Time replicates
M-R- effects of rhizobia and m ...... JA17 7 weeks roots no mycorrhizal fungi or rhizobia 8
M-R+ effects of rhizobia and m ...... JA17 7 weeks roots no mycorrhizal fungi but rhizobia present 8
M+R- effects of rhizobia and m ...... JA17 7 weeks roots mycorrhizal fungi present but no rhizobia 7
M+R+ effects of rhizobia and m ...... JA17 7 weeks roots mycorrhizal fungi and rhizobia present 8
CONTROL TSAR1 and TSAR2 activate ...... Jemalong J5 CONTROL 21 days Hairy root 3
TSAR1_OE TSAR1 and TSAR2 activate ...... Jemalong J5 TSAR1 over expression 21 days Hairy root 3
TSAR2_OE TSAR1 and TSAR2 activate ...... Jemalong J5 TSAR2 over expression 21 days Hairy root 3
Control transcriptome profiling o ...... R108 4th trifolate leaf of 3 week old plant leaf Infiltrated with 35S:MtCOla 4 days post infiltration 3
LAP1 transcriptome profiling o ...... R108 4th trifolate leaf of 3 week old plant leaf Infiltrated with 35S:MtLAP1 4 days post infiltration 3
AM-K RNA-seq of mycorrhizal Me ...... Jemalong A17 root Rhizophagus irregularis;
AM-K 		3
AM+K RNA-seq of mycorrhizal Me ...... Jemalong A17 root Rhizophagus irregularis;
AM+K 		3
NM-K RNA-seq of mycorrhizal Me ...... Jemalong A17 root control;
NM-K 		4
NM+K RNA-seq of mycorrhizal Me ...... Jemalong A17 root control;
NM+K 		4
Rbm_Mock_24H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis mock-treated no Nod factor 24h 3
Rbm_Mock_4H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis mock-treated no Nod factor 4h 3
Rbm_NF_24H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis treated with symbiotic lipochitooligosaccharides (LCOs) 1E-08 M Nod factor 24h 2
Rbm_NF_4H Symbiotic Interactions 3 A17 3 day old seedlings root epidermis treated with symbiotic lipochitooligosaccharides (LCOs) 1E-08 M Nod factor 4h 3
Control Transcriptomic response t ...... wild type A17 5 days Root Hairs control 0h 2
NodFactor_20h Transcriptomic response t ...... wild type A17 5 days Root Hairs Nod Factor 20h 2
NodFactor_4h Transcriptomic response t ...... wild type A17 5 days Root Hairs Nod Factor 4h 2
177_dmi3_+NF transcriptome profile of ...... Jemalong J5 dmi3 (TRV25) seedling root Nod factor treatment 1hr 3
177_dmi3_ctrl transcriptome profile of ...... Jemalong J5 dmi3 (TRV25) seedling root control 1hr 3
177_nfp_+NF transcriptome profile of ...... Jemalong A17 nfp (C31) seedling root Nod factor treatment 1hr 3
177_nfp_ctrl transcriptome profile of ...... Jemalong A17 nfp (C31) seedling root control 1hr 3
177_wt_+NF transcriptome profile of ...... Jemalong A17 wt seedling root Nod factor treatment 1hr 3
177_wt_ctrl transcriptome profile of ...... Jemalong A17 wt seedling root control 1hr 3