| Name | Experiment | Genotype | Mutation | Stage | Tissue/organ | Treatment | Level | Time | replicates | |
|---|---|---|---|---|---|---|---|---|---|---|
| M-R- | effects of rhizobia and m ...... | JA17 | 7 weeks | roots | no mycorrhizal fungi or rhizobia | 8 | ||||
| M-R+ | effects of rhizobia and m ...... | JA17 | 7 weeks | roots | no mycorrhizal fungi but rhizobia present | 8 | ||||
| M+R- | effects of rhizobia and m ...... | JA17 | 7 weeks | roots | mycorrhizal fungi present but no rhizobia | 7 | ||||
| M+R+ | effects of rhizobia and m ...... | JA17 | 7 weeks | roots | mycorrhizal fungi and rhizobia present | 8 | ||||
| CONTROL | TSAR1 and TSAR2 activate ...... | Jemalong J5 | CONTROL | 21 days | Hairy root | 3 | ||||
| TSAR1_OE | TSAR1 and TSAR2 activate ...... | Jemalong J5 | TSAR1 over expression | 21 days | Hairy root | 3 | ||||
| TSAR2_OE | TSAR1 and TSAR2 activate ...... | Jemalong J5 | TSAR2 over expression | 21 days | Hairy root | 3 | ||||
| Control | transcriptome profiling o ...... | R108 | 4th trifolate leaf of 3 week old plant | leaf | Infiltrated with 35S:MtCOla | 4 days post infiltration | 3 | |||
| LAP1 | transcriptome profiling o ...... | R108 | 4th trifolate leaf of 3 week old plant | leaf | Infiltrated with 35S:MtLAP1 | 4 days post infiltration | 3 | |||
| AM-K | RNA-seq of mycorrhizal Me ...... | Jemalong A17 | root |
Rhizophagus irregularis; AM-K |
3 | |||||
| AM+K | RNA-seq of mycorrhizal Me ...... | Jemalong A17 | root |
Rhizophagus irregularis; AM+K |
3 | |||||
| NM-K | RNA-seq of mycorrhizal Me ...... | Jemalong A17 | root |
control; NM-K |
4 | |||||
| NM+K | RNA-seq of mycorrhizal Me ...... | Jemalong A17 | root |
control; NM+K |
4 | |||||
| Rbm_Mock_24H | Symbiotic Interactions 3 | A17 | 3 day old seedlings | root epidermis | mock-treated | no Nod factor | 24h | 3 | ||
| Rbm_Mock_4H | Symbiotic Interactions 3 | A17 | 3 day old seedlings | root epidermis | mock-treated | no Nod factor | 4h | 3 | ||
| Rbm_NF_24H | Symbiotic Interactions 3 | A17 | 3 day old seedlings | root epidermis | treated with symbiotic lipochitooligosaccharides (LCOs) | 1E-08 M Nod factor | 24h | 2 | ||
| Rbm_NF_4H | Symbiotic Interactions 3 | A17 | 3 day old seedlings | root epidermis | treated with symbiotic lipochitooligosaccharides (LCOs) | 1E-08 M Nod factor | 4h | 3 | ||
| 177_dmi3_+NF | transcriptome profile of ...... | Jemalong J5 | dmi3 (TRV25) | seedling | root | Nod factor treatment | 1hr | 3 | ||
| 177_dmi3_ctrl | transcriptome profile of ...... | Jemalong J5 | dmi3 (TRV25) | seedling | root | control | 1hr | 3 | ||
| 177_nfp_+NF | transcriptome profile of ...... | Jemalong A17 | nfp (C31) | seedling | root | Nod factor treatment | 1hr | 3 | ||
| 177_nfp_ctrl | transcriptome profile of ...... | Jemalong A17 | nfp (C31) | seedling | root | control | 1hr | 3 | ||
| 177_wt_+NF | transcriptome profile of ...... | Jemalong A17 | wt | seedling | root | Nod factor treatment | 1hr | 3 | ||
| 177_wt_ctrl | transcriptome profile of ...... | Jemalong A17 | wt | seedling | root | control | 1hr | 3 |